[HTML][HTML] Origins and evolution of viruses of eukaryotes: The ultimate modularity

EV Koonin, VV Dolja, M Krupovic - Virology, 2015 - Elsevier
Viruses and other selfish genetic elements are dominant entities in the biosphere, with
respect to both physical abundance and genetic diversity. Various selfish elements …

Eukaryotic circular rep-encoding single-stranded DNA (CRESS DNA) viruses: ubiquitous viruses with small genomes and a diverse host range

L Zhao, K Rosario, M Breitbart, S Duffy - Advances in virus research, 2019 - Elsevier
While single-stranded DNA (ssDNA) was once thought to be a relatively rare genomic
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …

SDT: a virus classification tool based on pairwise sequence alignment and identity calculation

BM Muhire, A Varsani, DP Martin - PloS one, 2014 - journals.plos.org
The perpetually increasing rate at which viral full-genome sequences are being determined
is creating a pressing demand for computational tools that will aid the objective classification …

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses

S Roux, NE Solonenko, VT Dang, BT Poulos… - PeerJ, 2016 - peerj.com
Background Viruses strongly influence microbial population dynamics and ecosystem
functions. However, our ability to quantitatively evaluate those viral impacts is limited to the …

Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code

CK Yinda, SM Ghogomu, N Conceicao-Neto… - Virus …, 2018 - academic.oup.com
Most human emerging infectious diseases originate from wildlife and bats are a major
reservoir of viruses, a few of which have been highly pathogenic to humans. In some regions …

Environmental viral genomes shed new light on virus-host interactions in the ocean

Y Nishimura, H Watai, T Honda, T Mihara, K Omae… - Msphere, 2017 - Am Soc Microbiol
Metagenomics has revealed the existence of numerous uncharacterized viral lineages,
which are referred to as viral “dark matter.” However, our knowledge regarding viral …

A Mechanically Transmitted DNA Mycovirus Is Targeted by the Defence Machinery of Its Host, Botrytis cinerea

ME Khalifa, RM MacDiarmid - Viruses, 2021 - mdpi.com
Eukaryotic circular single-stranded DNA (ssDNA) viruses were known only to infect plants
and vertebrates until the discovery of the isolated DNA mycovirus from the fungus Sclerotinia …

[HTML][HTML] Snow and ice ecosystems: not so extreme

L Maccario, L Sanguino, TM Vogel, C Larose - Research in microbiology, 2015 - Elsevier
Snow and ice environments cover up to 21% of the Earth's surface. They have been
regarded as extreme environments because of their low temperatures, high UV irradiation …

Virological sampling of inaccessible wildlife with drones

JL Geoghegan, V Pirotta, E Harvey, A Smith… - Viruses, 2018 - mdpi.com
There is growing interest in characterizing the viromes of diverse mammalian species,
particularly in the context of disease emergence. However, little is known about virome …

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem

A Dayaram, ML Galatowitsch… - Infection, Genetics and …, 2016 - Elsevier
Over the last five years next-generation sequencing has become a cost effective and
efficient method for identifying known and unknown microorganisms. Access to this …