Alternative splicing regulatory networks: functions, mechanisms, and evolution

J Ule, BJ Blencowe - Molecular cell, 2019 - cell.com
High-throughput sequencing-based methods and their applications in the study of
transcriptomes have revolutionized our understanding of alternative splicing. Networks of …

The RNA polymerase II carboxy-terminal domain (CTD) code

D Eick, M Geyer - Chemical reviews, 2013 - ACS Publications
The smallest viable unit of life is the cell. From bacteria to mammals, all cells use the same
nucleic acid-based universal code for the maintenance and inheritance of genetic …

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

M Gulia-Nuss, AB Nuss, JM Meyer… - Nature …, 2016 - nature.com
Ticks transmit more pathogens to humans and animals than any other arthropod. We
describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors …

Circular RNA is expressed across the eukaryotic tree of life

PL Wang, Y Bao, MC Yee, SP Barrett, GJ Hogan… - PloS one, 2014 - journals.plos.org
An unexpectedly large fraction of genes in metazoans (human, mouse, zebrafish, worm, fruit
fly) express high levels of circularized RNAs containing canonical exons. Here we report that …

Ancient gene capture and recent gene loss shape the evolution of orthopoxvirus-host interaction genes

TG Senkevich, N Yutin, YI Wolf, EV Koonin, B Moss - MBio, 2021 - Am Soc Microbiol
The survival of viruses depends on their ability to resist host defenses and, of all animal virus
families, the poxviruses have the most antidefense genes. Orthopoxviruses (ORPV), a genus …

Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence …

G Janbon, KL Ormerod, D Paulet, EJ Byrnes III… - PLoS …, 2014 - journals.plos.org
Cryptococcus neoformans is a pathogenic basidiomycetous yeast responsible for more than
600,000 deaths each year. It occurs as two serotypes (A and D) representing two varieties …

The function of introns

M Chorev, L Carmel - Frontiers in genetics, 2012 - frontiersin.org
The intron–exon architecture of many eukaryotic genes raises the intriguing question of
whether this unique organization serves any function, or is it simply a result of the spread of …

Origin and evolution of spliceosomal introns

IB Rogozin, L Carmel, M Csuros, EV Koonin - Biology direct, 2012 - Springer
Evolution of exon-intron structure of eukaryotic genes has been a matter of long-standing,
intensive debate. The introns-early concept, later rebranded 'introns first'held that protein …

Genome reduction as the dominant mode of evolution

YI Wolf, EV Koonin - Bioessays, 2013 - Wiley Online Library
A common belief is that evolution generally proceeds towards greater complexity at both the
organismal and the genomic level, numerous examples of reductive evolution of parasites …

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

J Collén, B Porcel, W Carré, SG Ball… - Proceedings of the …, 2013 - National Acad Sciences
Red seaweeds are key components of coastal ecosystems and are economically important
as food and as a source of gelling agents, but their genes and genomes have received little …