A case study competition among methods for analyzing large spatial data

MJ Heaton, A Datta, AO Finley, R Furrer… - Journal of Agricultural …, 2019 - Springer
The Gaussian process is an indispensable tool for spatial data analysts. The onset of the
“big data” era, however, has lead to the traditional Gaussian process being computationally …

Efficient algorithms for Bayesian nearest neighbor Gaussian processes

AO Finley, A Datta, BD Cook, DC Morton… - … of Computational and …, 2019 - Taylor & Francis
We consider alternate formulations of recently proposed hierarchical nearest neighbor
Gaussian process (NNGP) models for improved convergence, faster computing time, and …

Variational nearest neighbor Gaussian process

L Wu, G Pleiss, JP Cunningham - … Conference on Machine …, 2022 - proceedings.mlr.press
Variational approximations to Gaussian processes (GPs) typically use a small set of
inducing points to form a low-rank approximation to the covariance matrix. In this work, we …

Computationally efficient joint species distribution modeling of big spatial data

G Tikhonov, L Duan, N Abrego, G Newell, M White… - Ecology, 2020 - Wiley Online Library
The ongoing global change and the increased interest in macroecological processes call for
the analysis of spatially extensive data on species communities to understand and forecast …

Nearest‐neighbor sparse Cholesky matrices in spatial statistics

A Datta - Wiley Interdisciplinary Reviews: Computational …, 2022 - Wiley Online Library
Gaussian process (GP) is a staple in the toolkit of a spatial statistician. Well‐documented
computing roadblocks in the analysis of large geospatial datasets using GPs have now …

Joint species distribution models with imperfect detection for high‐dimensional spatial data

JW Doser, AO Finley, S Banerjee - Ecology, 2023 - Wiley Online Library
Determining the spatial distributions of species and communities is a key task in ecology
and conservation efforts. Joint species distribution models are a fundamental tool in …

Highly scalable Bayesian geostatistical modeling via meshed Gaussian processes on partitioned domains

M Peruzzi, S Banerjee, AO Finley - Journal of the American …, 2022 - Taylor & Francis
We introduce a class of scalable Bayesian hierarchical models for the analysis of massive
geostatistical datasets. The underlying idea combines ideas on high-dimensional …

Precise and unbiased biomass estimation from GEDI data and the US forest inventory

J Bruening, P May, J Armston… - Frontiers in Forests and …, 2023 - frontiersin.org
Atmospheric CO2 concentrations are dependent on land-atmosphere carbon fluxes
resultant from forest dynamics and land-use changes. These fluxes are not well-constrained …

spAbundance: An R package for single‐species and multi‐species spatially explicit abundance models

JW Doser, AO Finley, M Kéry… - Methods in Ecology and …, 2024 - Wiley Online Library
Numerous modelling techniques exist to estimate abundance of plant and animal
populations. The most accurate methods account for multiple complexities found in …

spNNGP R package for nearest neighbor Gaussian process models

AO Finley, A Datta, S Banerjee - arXiv preprint arXiv:2001.09111, 2020 - arxiv.org
This paper describes and illustrates functionality of the spNNGP R package. The package
provides a suite of spatial regression models for Gaussian and non-Gaussian point …