Innovations to culturing the uncultured microbial majority
Despite the surge of microbial genome data, experimental testing is important to confirm
inferences about the cell biology, ecological roles and evolution of microorganisms. As the …
inferences about the cell biology, ecological roles and evolution of microorganisms. As the …
Coral microbiome dynamics, functions and design in a changing world
MJH van Oppen, LL Blackall - Nature Reviews Microbiology, 2019 - nature.com
Corals associate not only with dinoflagellates, which are their algal endosymbionts and
which have been extensively studied over the past four decades, but also with a variety of …
which have been extensively studied over the past four decades, but also with a variety of …
Structure and function of the soil microbiome underlying N2O emissions from global wetlands
Wetland soils are the greatest source of nitrous oxide (N2O), a critical greenhouse gas and
ozone depleter released by microbes. Yet, microbial players and processes underlying the …
ozone depleter released by microbes. Yet, microbial players and processes underlying the …
Tracking, targeting, and conserving soil biodiversity
Nature conservation literature and policy instruments mainly focus on the impacts of human
development and the benefits of nature conservation for oceans and aboveground terrestrial …
development and the benefits of nature conservation for oceans and aboveground terrestrial …
Primer, pipelines, parameters: issues in 16S rRNA gene sequencing
I Abellan-Schneyder, MS Matchado, S Reitmeier… - Msphere, 2021 - Am Soc Microbiol
Short-amplicon 16S rRNA gene sequencing is currently the method of choice for studies
investigating microbiomes. However, comparative studies on differences in procedures are …
investigating microbiomes. However, comparative studies on differences in procedures are …
MiDAS 5: Global diversity of bacteria and archaea in anaerobic digesters
MKD Dueholm, KS Andersen, AKC Korntved… - Nature …, 2024 - nature.com
Anaerobic digestion of organic waste into methane and carbon dioxide (biogas) is carried
out by complex microbial communities. Here, we use full-length 16S rRNA gene sequencing …
out by complex microbial communities. Here, we use full-length 16S rRNA gene sequencing …
[HTML][HTML] Computational methods for 16S metabarcoding studies using Nanopore sequencing data
Assessment of bacterial diversity through sequencing of 16S ribosomal RNA (16S rRNA)
genes has been an approach widely used in environmental microbiology, particularly since …
genes has been an approach widely used in environmental microbiology, particularly since …
Identification of plastic-associated species in the Mediterranean Sea using DNA metabarcoding with Nanopore MinION
K Davidov, E Iankelevich-Kounio, I Yakovenko… - Scientific reports, 2020 - nature.com
Plastic debris in the ocean form a new ecosystem, termed 'plastisphere', which hosts a
variety of marine organisms. Recent studies implemented DNA metabarcoding to …
variety of marine organisms. Recent studies implemented DNA metabarcoding to …
Vertebrate host phylogeny influences gut archaeal diversity
ND Youngblut, GH Reischer, S Dauser, S Maisch… - Nature …, 2021 - nature.com
Commonly used 16S rRNA gene primers do not detect the full range of archaeal diversity
present in the vertebrate gut. As a result, several questions regarding the archaeal …
present in the vertebrate gut. As a result, several questions regarding the archaeal …
Distinct assembly mechanisms underlie similar biogeographical patterns of rare and abundant bacteria in Tibetan Plateau grassland soils
Rare biosphere represents the majority of Earth's biodiversity and performs vital ecological
functions, yet little is known about its biogeographical patterns and community assembly …
functions, yet little is known about its biogeographical patterns and community assembly …