Innovations to culturing the uncultured microbial majority

WH Lewis, G Tahon, P Geesink, DZ Sousa… - Nature Reviews …, 2021 - nature.com
Despite the surge of microbial genome data, experimental testing is important to confirm
inferences about the cell biology, ecological roles and evolution of microorganisms. As the …

Coral microbiome dynamics, functions and design in a changing world

MJH van Oppen, LL Blackall - Nature Reviews Microbiology, 2019 - nature.com
Corals associate not only with dinoflagellates, which are their algal endosymbionts and
which have been extensively studied over the past four decades, but also with a variety of …

Structure and function of the soil microbiome underlying N2O emissions from global wetlands

M Bahram, M Espenberg, J Pärn… - Nature …, 2022 - nature.com
Wetland soils are the greatest source of nitrous oxide (N2O), a critical greenhouse gas and
ozone depleter released by microbes. Yet, microbial players and processes underlying the …

Tracking, targeting, and conserving soil biodiversity

CA Guerra, RD Bardgett, L Caon, TW Crowther… - Science, 2021 - science.org
Nature conservation literature and policy instruments mainly focus on the impacts of human
development and the benefits of nature conservation for oceans and aboveground terrestrial …

Primer, pipelines, parameters: issues in 16S rRNA gene sequencing

I Abellan-Schneyder, MS Matchado, S Reitmeier… - Msphere, 2021 - Am Soc Microbiol
Short-amplicon 16S rRNA gene sequencing is currently the method of choice for studies
investigating microbiomes. However, comparative studies on differences in procedures are …

MiDAS 5: Global diversity of bacteria and archaea in anaerobic digesters

MKD Dueholm, KS Andersen, AKC Korntved… - Nature …, 2024 - nature.com
Anaerobic digestion of organic waste into methane and carbon dioxide (biogas) is carried
out by complex microbial communities. Here, we use full-length 16S rRNA gene sequencing …

[HTML][HTML] Computational methods for 16S metabarcoding studies using Nanopore sequencing data

A Santos, R van Aerle, L Barrientos… - Computational and …, 2020 - Elsevier
Assessment of bacterial diversity through sequencing of 16S ribosomal RNA (16S rRNA)
genes has been an approach widely used in environmental microbiology, particularly since …

Identification of plastic-associated species in the Mediterranean Sea using DNA metabarcoding with Nanopore MinION

K Davidov, E Iankelevich-Kounio, I Yakovenko… - Scientific reports, 2020 - nature.com
Plastic debris in the ocean form a new ecosystem, termed 'plastisphere', which hosts a
variety of marine organisms. Recent studies implemented DNA metabarcoding to …

Vertebrate host phylogeny influences gut archaeal diversity

ND Youngblut, GH Reischer, S Dauser, S Maisch… - Nature …, 2021 - nature.com
Commonly used 16S rRNA gene primers do not detect the full range of archaeal diversity
present in the vertebrate gut. As a result, several questions regarding the archaeal …

Distinct assembly mechanisms underlie similar biogeographical patterns of rare and abundant bacteria in Tibetan Plateau grassland soils

M Ji, W Kong, J Stegen, L Yue, F Wang… - Environmental …, 2020 - Wiley Online Library
Rare biosphere represents the majority of Earth's biodiversity and performs vital ecological
functions, yet little is known about its biogeographical patterns and community assembly …