Peptide design principles for antimicrobial applications

MDT Torres, S Sothiselvam, TK Lu… - Journal of molecular …, 2019 - Elsevier
The increased incidence of bacterial resistance to available antibiotics represents a major
global health problem and highlights the need for novel anti-infective therapies …

Synthetic biology and computer-based frameworks for antimicrobial peptide discovery

MDT Torres, J Cao, OL Franco, TK Lu… - ACS …, 2021 - ACS Publications
Antibiotic resistance is one of the greatest challenges of our time. This global health problem
originated from a paucity of truly effective antibiotic classes and an increased incidence of …

[HTML][HTML] A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung

A Sountoulidis, S Marco Salas, E Braun, C Avenel… - Nature Cell …, 2023 - nature.com
The lung contains numerous specialized cell types with distinct roles in tissue function and
integrity. To clarify the origins and mechanisms generating cell heterogeneity, we created a …

NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning

MM Hasan, MA Alam, W Shoombuatong… - Briefings in …, 2021 - academic.oup.com
Neuropeptides (NPs) are the most versatile neurotransmitters in the immune systems that
regulate various central anxious hormones. An efficient and effective bioinformatics tool for …

SATPdb: a database of structurally annotated therapeutic peptides

S Singh, K Chaudhary, SK Dhanda… - Nucleic acids …, 2016 - academic.oup.com
Abstract SATPdb (http://crdd. osdd. net/raghava/satpdb/) is a database of structurally
annotated therapeutic peptides, curated from 22 public domain peptide databases/datasets …

In silico Approaches for the Design and Optimization of Interfering Peptides Against Protein–Protein Interactions

ZS Hashemi, M Zarei, MK Fath, M Ganji… - Frontiers in Molecular …, 2021 - frontiersin.org
Large contact surfaces of protein–protein interactions (PPIs) remain to be an ongoing issue
in the discovery and design of small molecule modulators. Peptides are intrinsically capable …

NeuroPep: a comprehensive resource of neuropeptides

Y Wang, M Wang, S Yin, R Jang, J Wang, Z Xue… - Database, 2015 - academic.oup.com
Neuropeptides play a variety of roles in many physiological processes and serve as
potential therapeutic targets for the treatment of some nervous-system disorders. In recent …

Recent advances in quantitative neuroproteomics

GE Craft, A Chen, AC Nairn - Methods, 2013 - Elsevier
The field of proteomics is undergoing rapid development in a number of different areas
including improvements in mass spectrometric platforms, peptide identification algorithms …

Dysregulation of neuropeptide and tau peptide signatures in human Alzheimer's disease brain

S Podvin, Z Jiang, B Boyarko, LA Rossitto… - ACS Chemical …, 2022 - ACS Publications
Synaptic dysfunction and loss occur in Alzheimer's disease (AD) brains, which results in
cognitive deficits and brain neurodegeneration. Neuropeptides comprise the major group of …

Neuroendocrinology of the lung revealed by single-cell RNA sequencing

CS Kuo, S Darmanis, AD de Arce, Y Liu, N Almanzar… - Elife, 2022 - elifesciences.org
Pulmonary neuroendocrine cells (PNECs) are sensory epithelial cells that transmit airway
status to the brain via sensory neurons and locally via calcitonin gene-related peptide …