DNA methylation methods: Global DNA methylation and methylomic analyses
S Li, TO Tollefsbol - Methods, 2021 - Elsevier
DNA methylation provides a pivotal layer of epigenetic regulation in eukaryotes that has
significant involvement for numerous biological processes in health and disease. The …
significant involvement for numerous biological processes in health and disease. The …
Ecological plant epigenetics: Evidence from model and non‐model species, and the way forward
Growing evidence shows that epigenetic mechanisms contribute to complex traits, with
implications across many fields of biology. In plant ecology, recent studies have attempted to …
implications across many fields of biology. In plant ecology, recent studies have attempted to …
Deleting DNMT3A in CAR T cells prevents exhaustion and enhances antitumor activity
B Prinzing, CC Zebley, CT Petersen, Y Fan… - Science translational …, 2021 - science.org
Chimeric antigen receptor (CAR) T cell therapy is revolutionizing cancer immunotherapy for
patients with B cell malignancies and is now being developed for solid tumors and chronic …
patients with B cell malignancies and is now being developed for solid tumors and chronic …
Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos
Histone modifications have critical roles in regulating the expression of developmental
genes during embryo development in mammals,. However, genome-wide analyses of …
genes during embryo development in mammals,. However, genome-wide analyses of …
Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development
Abstract H3K9me3-dependent heterochromatin is a major barrier of cell fate changes that
must be reprogrammed after fertilization. However, the molecular details of these events are …
must be reprogrammed after fertilization. However, the molecular details of these events are …
Differential methylation analysis for BS-seq data under general experimental design
Y Park, H Wu - Bioinformatics, 2016 - academic.oup.com
Motivation: DNA methylation is an epigenetic modification with important roles in many
biological processes and diseases. Bisulfite sequencing (BS-seq) has emerged recently as …
biological processes and diseases. Bisulfite sequencing (BS-seq) has emerged recently as …
[HTML][HTML] Stage-specific H3K9me3 occupancy ensures retrotransposon silencing in human pre-implantation embryos
R Xu, S Li, Q Wu, C Li, M Jiang, L Guo, M Chen, L Yang… - Cell Stem Cell, 2022 - cell.com
Summary H3K9me3, as a hallmark of heterochromatin, is important for cell-fate specification.
However, it remains unknown how H3K9me3 is reprogrammed during human early embryo …
However, it remains unknown how H3K9me3 is reprogrammed during human early embryo …
Epigenomic profiling of young and aged HSCs reveals concerted changes during aging that reinforce self-renewal
To investigate the cell-intrinsic aging mechanisms that erode the function of somatic stem
cells during aging, we have conducted a comprehensive integrated genomic analysis of …
cells during aging, we have conducted a comprehensive integrated genomic analysis of …
Metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data
The detection of differentially methylated regions (DMRs) is a necessary prerequisite for
characterizing different epigenetic states. We present a novel program, metilene, to identify …
characterizing different epigenetic states. We present a novel program, metilene, to identify …
LKB1 loss links serine metabolism to DNA methylation and tumorigenesis
Intermediary metabolism generates substrates for chromatin modification, enabling the
potential coupling of metabolic and epigenetic states. Here we identify a network linking …
potential coupling of metabolic and epigenetic states. Here we identify a network linking …