[HTML][HTML] How genomics can help biodiversity conservation
The availability of public genomic resources can greatly assist biodiversity assessment,
conservation, and restoration efforts by providing evidence for scientifically informed …
conservation, and restoration efforts by providing evidence for scientifically informed …
[HTML][HTML] A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data
Metagenomic sequencing provides a culture-independent avenue to investigate the
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
A complete domain-to-species taxonomy for Bacteria and Archaea
Abstract The Genome Taxonomy Database is a phylogenetically consistent, genome-based
taxonomy that provides rank-normalized classifications for~ 150,000 bacterial and archaeal …
taxonomy that provides rank-normalized classifications for~ 150,000 bacterial and archaeal …
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
Abstract Summary The Genome Taxonomy Database Toolkit (GTDB-Tk) provides objective
taxonomic assignments for bacterial and archaeal genomes based on the GTDB. GTDB-Tk …
taxonomic assignments for bacterial and archaeal genomes based on the GTDB. GTDB-Tk …
SeqCode: a nomenclatural code for prokaryotes described from sequence data
Most prokaryotes are not available as pure cultures and therefore ineligible for naming
under the rules and recommendations of the International Code of Nomenclature of …
under the rules and recommendations of the International Code of Nomenclature of …
A catalogue of 1,167 genomes from the human gut archaeome
The human gut microbiome plays an important role in health, but its archaeal diversity
remains largely unexplored. In the present study, we report the analysis of 1,167 …
remains largely unexplored. In the present study, we report the analysis of 1,167 …
Lactobacillus reuteri tryptophan metabolism promotes host susceptibility to CNS autoimmunity
TL Montgomery, K Eckstrom, KH Lile, S Caldwell… - Microbiome, 2022 - Springer
Background Dysregulation of gut microbiota-associated tryptophan metabolism has been
observed in patients with multiple sclerosis. However, defining direct mechanistic links …
observed in patients with multiple sclerosis. However, defining direct mechanistic links …
The reliability of metagenome-assembled genomes (MAGs) in representing natural populations: insights from comparing MAGs against isolate genomes derived from …
A Meziti, LM Rodriguez-R, JK Hatt… - Applied and …, 2021 - Am Soc Microbiol
The recovery of metagenome-assembled genomes (MAGs) from metagenomic data has
recently become a common task for microbial studies. The strengths and limitations of the …
recently become a common task for microbial studies. The strengths and limitations of the …
Roadmap for naming uncultivated Archaea and Bacteria
AE Murray, J Freudenstein, S Gribaldo… - Nature …, 2020 - nature.com
The assembly of single-amplified genomes (SAGs) and metagenome-assembled genomes
(MAGs) has led to a surge in genome-based discoveries of members affiliated with Archaea …
(MAGs) has led to a surge in genome-based discoveries of members affiliated with Archaea …
Chemical and genomic characterization of a potential probiotic treatment for stony coral tissue loss disease
Considered one of the most devastating coral disease outbreaks in history, stony coral
tissue loss disease (SCTLD) is currently spreading throughout Florida's coral reefs and the …
tissue loss disease (SCTLD) is currently spreading throughout Florida's coral reefs and the …