Mass spectrometry-based metabolomics in microbiome investigations
A Bauermeister, H Mannochio-Russo… - Nature Reviews …, 2022 - nature.com
Microbiotas are a malleable part of ecosystems, including the human ecosystem.
Microorganisms affect not only the chemistry of their specific niche, such as the human gut …
Microorganisms affect not only the chemistry of their specific niche, such as the human gut …
Identification and prioritization of environmental organic pollutants: from an analytical and toxicological perspective
Exposure to environmental organic pollutants has triggered significant ecological impacts
and adverse health outcomes, which have been received substantial and increasing …
and adverse health outcomes, which have been received substantial and increasing …
HMDB 5.0: the human metabolome database for 2022
DS Wishart, AC Guo, E Oler, F Wang… - Nucleic acids …, 2022 - academic.oup.com
Abstract The Human Metabolome Database or HMDB (https://hmdb. ca) has been providing
comprehensive reference information about human metabolites and their associated …
comprehensive reference information about human metabolites and their associated …
Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity
Ulcerative colitis (UC) is driven by disruptions in host–microbiota homoeostasis, but current
treatments exclusively target host inflammatory pathways. To understand how host …
treatments exclusively target host inflammatory pathways. To understand how host …
The core metabolome and root exudation dynamics of three phylogenetically distinct plant species
S McLaughlin, K Zhalnina, S Kosina… - Nature …, 2023 - nature.com
Root exudates are plant-derived, exported metabolites likely shaping root-associated
microbiomes by acting as nutrients and signals. However, root exudation dynamics are …
microbiomes by acting as nutrients and signals. However, root exudation dynamics are …
CFM-ID 4.0: more accurate ESI-MS/MS spectral prediction and compound identification
In the field of metabolomics, mass spectrometry (MS) is the method most commonly used for
identifying and annotating metabolites. As this typically involves matching a given MS …
identifying and annotating metabolites. As this typically involves matching a given MS …
The Natural Products Atlas 2.0: a database of microbially-derived natural products
JA van Santen, EF Poynton, D Iskakova… - Nucleic acids …, 2022 - academic.oup.com
Within the natural products field there is an increasing emphasis on the study of compounds
from microbial sources. This has been fuelled by interest in the central role that …
from microbial sources. This has been fuelled by interest in the central role that …
COCONUT online: collection of open natural products database
Natural products (NPs) are small molecules produced by living organisms with potential
applications in pharmacology and other industries as many of them are bioactive. This …
applications in pharmacology and other industries as many of them are bioactive. This …
Machine learning for chemical reactions
M Meuwly - Chemical Reviews, 2021 - ACS Publications
Machine learning (ML) techniques applied to chemical reactions have a long history. The
present contribution discusses applications ranging from small molecule reaction dynamics …
present contribution discusses applications ranging from small molecule reaction dynamics …
Toward a global understanding of chemical pollution: a first comprehensive analysis of national and regional chemical inventories
Chemicals, while bringing benefits to society, may be released during their lifecycles and
possibly cause harm to humans and ecosystems. Chemical pollution has been mentioned …
possibly cause harm to humans and ecosystems. Chemical pollution has been mentioned …