Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Fungal taxonomy and sequence-based nomenclature

R Lücking, MC Aime, B Robbertse, AN Miller… - Nature …, 2021 - nature.com
The identification and proper naming of microfungi, in particular plant, animal and human
pathogens, remains challenging. Molecular identification is becoming the default approach …

Reduction of microbial diversity in grassland soil is driven by long-term climate warming

L Wu, Y Zhang, X Guo, D Ning, X Zhou, J Feng… - Nature …, 2022 - nature.com
Anthropogenic climate change threatens ecosystem functioning. Soil biodiversity is essential
for maintaining the health of terrestrial systems, but how climate change affects the richness …

Environmental stress destabilizes microbial networks

DJ Hernandez, AS David, ES Menges… - The ISME …, 2021 - academic.oup.com
Environmental stress is increasing worldwide, yet we lack a clear picture of how stress
disrupts the stability of microbial communities and the ecosystem services they provide …

FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

S Põlme, K Abarenkov, R Henrik Nilsson, BD Lindahl… - Fungal diversity, 2020 - Springer
The cryptic lifestyle of most fungi necessitates molecular identification of the guild in
environmental studies. Over the past decades, rapid development and affordability of …

[HTML][HTML] Soil microbiome indicators can predict crop growth response to large-scale inoculation with arbuscular mycorrhizal fungi

S Lutz, N Bodenhausen, J Hess, A Valzano-Held… - Nature …, 2023 - nature.com
Alternative solutions to mineral fertilizers and pesticides that reduce the environmental
impact of agriculture are urgently needed. Arbuscular mycorrhizal fungi (AMF) can enhance …

[HTML][HTML] Patterns in soil microbial diversity across Europe

M Labouyrie, C Ballabio, F Romero, P Panagos… - Nature …, 2023 - nature.com
Factors driving microbial community composition and diversity are well established but the
relationship with microbial functioning is poorly understood, especially at large scales. We …

[HTML][HTML] Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

[HTML][HTML] Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity

JP Shaffer, LF Nothias, LR Thompson, JG Sanders… - Nature …, 2022 - nature.com
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …

The numbers of fungi: are the most speciose genera truly diverse?

CS Bhunjun, T Niskanen, N Suwannarach… - Fungal Diversity, 2022 - Springer
Fungi play vital roles in ecosystems as endophytes, pathogens and saprobes. The current
estimate of fungal diversity is highly uncertain, ranging from 1.5 to 12 million, but only …