Complexity of the alternative splicing landscape in plants
Alternative splicing (AS) of precursor mRNAs (pre-mRNAs) from multiexon genes allows
organisms to increase their coding potential and regulate gene expression through multiple …
organisms to increase their coding potential and regulate gene expression through multiple …
[HTML][HTML] Mining and development of novel SSR markers using next generation sequencing (NGS) data in plants
S Taheri, T Lee Abdullah, MR Yusop, MM Hanafi… - Molecules, 2018 - mdpi.com
Microsatellites, or simple sequence repeats (SSRs), are one of the most informative and
multi-purpose genetic markers exploited in plant functional genomics. However, the …
multi-purpose genetic markers exploited in plant functional genomics. However, the …
Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and …
The incompatible pathosystem between resistant cotton (Gossypium barbadense cv. 7124)
and Verticillium dahliae strain V991 was used to study the cotton transcriptome changes …
and Verticillium dahliae strain V991 was used to study the cotton transcriptome changes …
The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program
M Fasoli, S Dal Santo, S Zenoni, GB Tornielli… - The Plant …, 2012 - academic.oup.com
We developed a genome-wide transcriptomic atlas of grapevine (Vitis vinifera) based on 54
samples representing green and woody tissues and organs at different developmental …
samples representing green and woody tissues and organs at different developmental …
[HTML][HTML] Genome-wide analysis of the grapevine stilbene synthase multigenic family: genomic organization and expression profiles upon biotic and abiotic stresses
Background Plant stilbenes are a small group of phenylpropanoids, which have been
detected in at least 72 unrelated plant species and accumulate in response to biotic and …
detected in at least 72 unrelated plant species and accumulate in response to biotic and …
Application of genomic tools in plant breeding
AM Perez-de-Castro, S Vilanova, J Cañizares… - Current …, 2012 - ingentaconnect.com
Plant breeding has been very successful in developing improved varieties using
conventional tools and methodologies. Nowadays, the availability of genomic tools and …
conventional tools and methodologies. Nowadays, the availability of genomic tools and …
Full‐length de novo assembly of RNA‐seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species
Next‐generation sequencing technologies allow an almost exhaustive survey of the
transcriptome, even in species with no available genome sequence. To produce a Unigene …
transcriptome, even in species with no available genome sequence. To produce a Unigene …
[HTML][HTML] A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
Background Alternative splicing (AS) significantly enhances transcriptome complexity. It is
differentially regulated in a wide variety of cell types and plays a role in several cellular …
differentially regulated in a wide variety of cell types and plays a role in several cellular …
Ecophysiological, genetic, and molecular causes of variation in grape berry weight and composition: a review
Berry fresh weight and composition are under the control of complex interactions among
genotype, environmental factors, and viticulture practice, which all affect not only the mean …
genotype, environmental factors, and viticulture practice, which all affect not only the mean …
[HTML][HTML] De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea …
D Li, Z Deng, B Qin, X Liu, Z Men - BMC genomics, 2012 - Springer
Background In rubber tree, bark is one of important agricultural and biological organs.
However, the molecular mechanism involved in the bark formation and development in …
However, the molecular mechanism involved in the bark formation and development in …