Dimensionality reduction for large-scale neural recordings

JP Cunningham, BM Yu - Nature neuroscience, 2014 - nature.com
Most sensory, cognitive and motor functions depend on the interactions of many neurons. In
recent years, there has been rapid development and increasing use of technologies for …

Complex brain networks: graph theoretical analysis of structural and functional systems

E Bullmore, O Sporns - Nature reviews neuroscience, 2009 - nature.com
Recent developments in the quantitative analysis of complex networks, based largely on
graph theory, have been rapidly translated to studies of brain network organization. The …

[HTML][HTML] Controlling visually guided behavior by holographic recalling of cortical ensembles

L Carrillo-Reid, S Han, W Yang, A Akrouh, R Yuste - Cell, 2019 - cell.com
Neurons in cortical circuits are often coactivated as ensembles, yet it is unclear whether
ensembles play a functional role in behavior. Some ensemble neurons have pattern …

A theory of multineuronal dimensionality, dynamics and measurement

P Gao, E Trautmann, B Yu, G Santhanam, S Ryu… - BioRxiv, 2017 - biorxiv.org
In many experiments, neuroscientists tightly control behavior, record many trials, and obtain
trial-averaged firing rates from hundreds of neurons in circuits containing billions of …

Imprinting and recalling cortical ensembles

L Carrillo-Reid, W Yang, Y Bando, DS Peterka, R Yuste - Science, 2016 - science.org
Neuronal ensembles are coactive groups of neurons that may represent building blocks of
cortical circuits. These ensembles could be formed by Hebbian plasticity, whereby synapses …

On simplicity and complexity in the brave new world of large-scale neuroscience

P Gao, S Ganguli - Current opinion in neurobiology, 2015 - Elsevier
Technological advances have dramatically expanded our ability to probe multi-neuronal
dynamics and connectivity in the brain. However, our ability to extract a simple conceptual …

Gaussian-process factor analysis for low-dimensional single-trial analysis of neural population activity

BM Yu, JP Cunningham… - Advances in neural …, 2008 - proceedings.neurips.cc
We consider the problem of extracting smooth low-dimensional neural trajectories''that
summarize the activity recorded simultaneously from tens to hundreds of neurons on …

[HTML][HTML] Integrated neural dynamics of sensorimotor decisions and actions

D Thura, JF Cabana, A Feghaly, P Cisek - PLoS biology, 2022 - journals.plos.org
Recent theoretical models suggest that deciding about actions and executing them are not
implemented by completely distinct neural mechanisms but are instead two modes of an …

[HTML][HTML] Long-term stability of cortical ensembles

J Pérez-Ortega, T Alejandre-García, R Yuste - Elife, 2021 - elifesciences.org
Neuronal ensembles, coactive groups of neurons found in spontaneous and evoked cortical
activity, are causally related to memories and perception, but it is still unknown how stable or …

[HTML][HTML] Model-free reconstruction of excitatory neuronal connectivity from calcium imaging signals

O Stetter, D Battaglia, J Soriano, T Geisel - 2012 - journals.plos.org
A systematic assessment of global neural network connectivity through direct
electrophysiological assays has remained technically infeasible, even in simpler systems …