Dickkopf-1: A promising target for cancer immunotherapy
HY Chu, Z Chen, L Wang, ZK Zhang, X Tan… - Frontiers in …, 2021 - frontiersin.org
Clinical studies in a range of cancers have detected elevated levels of the Wnt antagonist
Dickkopf-1 (DKK1) in the serum or tumors of patients, and this was frequently associated …
Dickkopf-1 (DKK1) in the serum or tumors of patients, and this was frequently associated …
Advancements and hurdles in the development of a vaccine for triple-negative breast cancer: A comprehensive review of multi-omics and immunomics strategies
Abstract Triple-Negative Breast Cancer (TNBC) presents a significant challenge in oncology
due to its aggressive behavior and limited therapeutic options. This review explores the …
due to its aggressive behavior and limited therapeutic options. This review explores the …
A self-consistent sonification method to translate amino acid sequences into musical compositions and application in protein design using artificial intelligence
We report a self-consistent method to translate amino acid sequences into audible sound,
use the representation in the musical space to train a neural network, and then apply it to …
use the representation in the musical space to train a neural network, and then apply it to …
iHyd-LysSite (EPSV): identifying hydroxylysine sites in protein using statistical formulation by extracting enhanced position and sequence variant feature technique
MK Mahmood, A Ehsan, YD Khan… - Current Genomics, 2020 - ingentaconnect.com
Introduction: Hydroxylation is one of the most important post-translational modifications
(PTM) in cellular functions and is linked to various diseases. The addition of one of the …
(PTM) in cellular functions and is linked to various diseases. The addition of one of the …
Sonification based de novo protein design using artificial intelligence, structure prediction, and analysis using molecular modeling
CH Yu, MJ Buehler - APL bioengineering, 2020 - pubs.aip.org
We report the use of a deep learning model to design de novo proteins, based on the
interplay of elementary building blocks via hierarchical patterns. The deep neural network …
interplay of elementary building blocks via hierarchical patterns. The deep neural network …
[HTML][HTML] PCPD: Plant cytochrome P450 database and web-based tools for structural construction and ligand docking
Plant cytochrome P450s play key roles in the diversification and functional modification of
plant natural products. Although over 200,000 plant P450 gene sequences have been …
plant natural products. Although over 200,000 plant P450 gene sequences have been …
Characterization of the NiRAN domain from RNA-dependent RNA polymerase provides insights into a potential therapeutic target against SARS-CoV-2
Apart from the canonical fingers, palm and thumb domains, the RNA dependent RNA
polymerases (RdRp) from the viral order Nidovirales possess two additional domains. Of …
polymerases (RdRp) from the viral order Nidovirales possess two additional domains. Of …
VHH Structural Modelling Approaches: A Critical Review
P Vishwakarma, AM Vattekatte, N Shinada… - International Journal of …, 2022 - mdpi.com
VHH, ie, VH domains of camelid single-chain antibodies, are very promising therapeutic
agents due to their significant physicochemical advantages compared to classical …
agents due to their significant physicochemical advantages compared to classical …
PDB-2-PBv3. 0: An updated protein block database
MP Karuppasamy, S Venkateswaran… - … of Bioinformatics and …, 2020 - World Scientific
Our protein block (PB) sequence database PDB-2-PBv1. 0 provides PB sequences and
dihedral angles for 74,297 protein structures comprising of 103,252 protein chains of Protein …
dihedral angles for 74,297 protein structures comprising of 103,252 protein chains of Protein …
Artificial intelligence method to design and fold alpha-helical structural proteins from the primary amino acid sequence
The development of rational techniques to discover new mechanically relevant proteins for
use in variety of applications ranging from mechanics, agriculture to biotechnology remains …
use in variety of applications ranging from mechanics, agriculture to biotechnology remains …