Generative models of brain dynamics

M Ramezanian-Panahi, G Abrevaya… - Frontiers in artificial …, 2022 - frontiersin.org
This review article gives a high-level overview of the approaches across different scales of
organization and levels of abstraction. The studies covered in this paper include …

Brian 2, an intuitive and efficient neural simulator

M Stimberg, R Brette, DFM Goodman - elife, 2019 - elifesciences.org
Brian 2 allows scientists to simply and efficiently simulate spiking neural network models.
These models can feature novel dynamical equations, their interactions with the …

BrainPy, a flexible, integrative, efficient, and extensible framework for general-purpose brain dynamics programming

C Wang, T Zhang, X Chen, S He, S Li, S Wu - elife, 2023 - elifesciences.org
Elucidating the intricate neural mechanisms underlying brain functions requires integrative
brain dynamics modeling. To facilitate this process, it is crucial to develop a general-purpose …

Modernizing the NEURON simulator for sustainability, portability, and performance

O Awile, P Kumbhar, N Cornu… - Frontiers in …, 2022 - frontiersin.org
The need for reproducible, credible, multiscale biological modeling has led to the
development of standardized simulation platforms, such as the widely-used NEURON …

Larger GPU-accelerated brain simulations with procedural connectivity

JC Knight, T Nowotny - Nature Computational Science, 2021 - nature.com
Simulations are an important tool for investigating brain function but large models are
needed to faithfully reproduce the statistics and dynamics of brain activity. Simulating large …

CoreNEURON: an optimized compute engine for the NEURON simulator

P Kumbhar, M Hines, J Fouriaux… - Frontiers in …, 2019 - frontiersin.org
The NEURON simulator has been developed over the past three decades and is widely
used by neuroscientists to model the electrical activity of neuronal networks. Large network …

Brian2GeNN: accelerating spiking neural network simulations with graphics hardware

M Stimberg, DFM Goodman, T Nowotny - Scientific reports, 2020 - nature.com
Abstract “Brian” is a popular Python-based simulator for spiking neural networks, commonly
used in computational neuroscience. GeNN is a C++-based meta-compiler for accelerating …

Generative Models of Brain Dynamics--A review

MR Panahi, G Abrevaya, JC Gagnon-Audet… - arXiv preprint arXiv …, 2021 - arxiv.org
The principled design and discovery of biologically-and physically-informed models of
neuronal dynamics has been advancing since the mid-twentieth century. Recent …

OpenSBLI: Automated code-generation for heterogeneous computing architectures applied to compressible fluid dynamics on structured grids

DJ Lusher, SP Jammy, ND Sandham - Computer Physics Communications, 2021 - Elsevier
OpenSBLI is an open-source code-generation system for compressible fluid dynamics
(CFD) on heterogeneous computing architectures. Written in Python, OpenSBLI is an explicit …

SpiNNTools: the execution engine for the SpiNNaker platform

AGD Rowley, C Brenninkmeijer, S Davidson… - Frontiers in …, 2019 - frontiersin.org
SpiNNaker is a massively parallel distributed architecture primarily focused on real time
simulation of spiking neural networks. The largest realization of the architecture consists of …