Mass spectrometry-based protein footprinting for higher-order structure analysis: fundamentals and applications
Proteins adopt different higher-order structures (HOS) to enable their unique biological
functions. Understanding the complexities of protein higher-order structures and dynamics …
functions. Understanding the complexities of protein higher-order structures and dynamics …
Understanding the transcriptome through RNA structure
RNA structure is crucial for gene regulation and function. In the past, transcriptomes have
largely been parsed by primary sequences and expression levels, but it is now becoming …
largely been parsed by primary sequences and expression levels, but it is now becoming …
RNA design rules from a massive open laboratory
Self-assembling RNA molecules present compelling substrates for the rational interrogation
and control of living systems. However, imperfect in silico models—even at the secondary …
and control of living systems. However, imperfect in silico models—even at the secondary …
Disease-associated mutations that alter the RNA structural ensemble
M Halvorsen, JS Martin, S Broadaway… - PLoS genetics, 2010 - journals.plos.org
Genome-wide association studies (GWAS) often identify disease-associated mutations in
intergenic and non-coding regions of the genome. Given the high percentage of the human …
intergenic and non-coding regions of the genome. Given the high percentage of the human …
[图书][B] Chemical reagents for protein modification
RL Lundblad - 2004 - taylorfrancis.com
Revised and updated, Chemical Reagents for Protein Modification, Third Edition is an
encyclopedic work describing the many approaches to the site-specific modification of …
encyclopedic work describing the many approaches to the site-specific modification of …
Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates
MY Angela, PM Gasper, L Cheng, LB Lai, S Kaur… - Molecular cell, 2021 - cell.com
The series of RNA folding events that occur during transcription can critically influence
cellular RNA function. Here, we present reconstructing RNA dynamics from data (R2D2), a …
cellular RNA function. Here, we present reconstructing RNA dynamics from data (R2D2), a …
The RNA structurome: transcriptome-wide structure probing with next-generation sequencing
RNA folds into intricate structures that enable its pivotal roles in biology, ranging from
regulation of gene expression to ligand sensing and enzymatic functions. Therefore …
regulation of gene expression to ligand sensing and enzymatic functions. Therefore …
Modeling RNA secondary structure folding ensembles using SHAPE mapping data
RNA secondary structure prediction is widely used for developing hypotheses about the
structures of RNA sequences, and structure can provide insight about RNA function. The …
structures of RNA sequences, and structure can provide insight about RNA function. The …
Computational analysis of conserved RNA secondary structure in transcriptomes and genomes
SR Eddy - Annual review of biophysics, 2014 - annualreviews.org
Transcriptomics experiments and computational predictions both enable systematic
discovery of new functional RNAs. However, many putative noncoding transcripts arise …
discovery of new functional RNAs. However, many putative noncoding transcripts arise …
Finding the target sites of RNA‐binding proteins
X Li, H Kazan, HD Lipshitz… - Wiley Interdisciplinary …, 2014 - Wiley Online Library
RNA–protein interactions differ from DNA–protein interactions because of the central role of
RNA secondary structure. Some RNA‐binding domains (RBDs) recognize their target sites …
RNA secondary structure. Some RNA‐binding domains (RBDs) recognize their target sites …