Synthetic biology: bottom-up assembly of molecular systems
The bottom-up assembly of biological and chemical components opens exciting
opportunities to engineer artificial vesicular systems for applications with previously unmet …
opportunities to engineer artificial vesicular systems for applications with previously unmet …
Ultrahigh-Throughput Enzyme Engineering and Discovery in In Vitro Compartments
Novel and improved biocatalysts are increasingly sourced from libraries via experimental
screening. The success of such campaigns is crucially dependent on the number of …
screening. The success of such campaigns is crucially dependent on the number of …
[HTML][HTML] DIMPLE: deep insertion, deletion, and missense mutation libraries for exploring protein variation in evolution, disease, and biology
Insertions and deletions (indels) enable evolution and cause disease. Due to technical
challenges, indels are left out of most mutational scans, limiting our understanding of them in …
challenges, indels are left out of most mutational scans, limiting our understanding of them in …
[HTML][HTML] Insertions and deletions in protein evolution and engineering
S Savino, T Desmet, J Franceus - Biotechnology Advances, 2022 - Elsevier
Protein evolution or engineering studies are traditionally focused on amino acid
substitutions and the way these contribute to fitness. Meanwhile, the insertion and deletion …
substitutions and the way these contribute to fitness. Meanwhile, the insertion and deletion …
[HTML][HTML] Engineering the protein dynamics of an ancestral luciferase
Protein dynamics are often invoked in explanations of enzyme catalysis, but their design has
proven elusive. Here we track the role of dynamics in evolution, starting from the evolvable …
proven elusive. Here we track the role of dynamics in evolution, starting from the evolvable …
[HTML][HTML] A primer to directed evolution: current methodologies and future directions
Directed evolution is one of the most powerful tools for protein engineering and functions by
harnessing natural evolution, but on a shorter timescale. It enables the rapid selection of …
harnessing natural evolution, but on a shorter timescale. It enables the rapid selection of …
Mechanisms of protein evolution
How do proteins evolve? How do changes in sequence mediate changes in protein
structure, and in turn in function? This question has multiple angles, ranging from …
structure, and in turn in function? This question has multiple angles, ranging from …
Insertions and deletions (indels): a missing piece of the protein engineering jigsaw
CM Miton, N Tokuriki - Biochemistry, 2022 - ACS Publications
Over the years, protein engineers have studied nature and borrowed its tricks to accelerate
protein evolution in the test tube. While there have been considerable advances, our ability …
protein evolution in the test tube. While there have been considerable advances, our ability …
[HTML][HTML] An atlas of amyloid aggregation: the impact of substitutions, insertions, deletions and truncations on amyloid beta fibril nucleation
Multiplexed assays of variant effects (MAVEs) guide clinical variant interpretation and reveal
disease mechanisms. To date, MAVEs have focussed on a single mutation type—amino …
disease mechanisms. To date, MAVEs have focussed on a single mutation type—amino …
A mechanistic view of enzyme evolution
G Yang, CM Miton, N Tokuriki - Protein Science, 2020 - Wiley Online Library
New enzyme functions often evolve through the recruitment and optimization of latent
promiscuous activities. How do mutations alter the molecular architecture of enzymes to …
promiscuous activities. How do mutations alter the molecular architecture of enzymes to …