Apple whole genome sequences: recent advances and new prospects

CP Peace, L Bianco, M Troggio… - Horticulture …, 2019 - academic.oup.com
In 2010, a major scientific milestone was achieved for tree fruit crops: publication of the first
draft whole genome sequence (WGS) for apple (Malus domestica). This WGS, v1. 0, was …

An integrated approach for increasing breeding efficiency in apple and peach in Europe

F Laurens, MJ Aranzana, P Arus, D Bassi… - Horticulture …, 2018 - academic.oup.com
Despite the availability of whole genome sequences of apple and peach, there has been a
considerable gap between genomics and breeding. To bridge the gap, the European Union …

Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication

X Sun, C Jiao, H Schwaninger, CT Chao, Y Ma… - Nature …, 2020 - nature.com
Domestication of the apple was mainly driven by interspecific hybridization. In the present
study, we report the haplotype-resolved genomes of the cultivated apple (Malus domestica …

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

N Daccord, JM Celton, G Linsmith, C Becker… - Nature …, 2017 - nature.com
Using the latest sequencing and optical mapping technologies, we have produced a high-
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …

A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci

KU Laverty, JM Stout, MJ Sullivan, H Shah… - Genome …, 2019 - genome.cshlp.org
Cannabis sativa is widely cultivated for medicinal, food, industrial, and recreational use, but
much remains unknown regarding its genetics, including the molecular determinants of …

Unraveling a genetic roadmap for improved taste in the domesticated apple

L Liao, W Zhang, BO Zhang, T Fang, XF Wang, Y Cai… - Molecular Plant, 2021 - cell.com
Although taste is an important aspect of fruit quality, an understanding of its genetic control
remains elusive in apple and other fruit crops. In this study, we conducted genomic …

High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common …

S Vanderzande, NP Howard, L Cai, C Da Silva Linge… - PloS one, 2019 - journals.plos.org
High-quality genotypic data is a requirement for many genetic analyses. For any crop, errors
in genotype calls, phasing of markers, linkage maps, pedigree records, and unnoticed …

Whole-genome resequencing identifies candidate genes and allelic variation in the MdNADP-ME promoter that regulate fruit malate and fructose contents in apple

W Fu, L Zhao, W Qiu, X Xu, M Ding, L Lan, S Qu… - Plant …, 2024 - cell.com
Soluble sugar and organic acids are key determinants of fruit organoleptic quality and
directly affect the commodity value and economic returns of fruit crops. We performed whole …

The red bayberry genome and genetic basis of sex determination

HM Jia, HJ Jia, QL Cai, Y Wang… - Plant Biotechnology …, 2019 - Wiley Online Library
Morella rubra, red bayberry, is an economically important fruit tree in south China. Here, we
assembled the first high‐quality genome for both a female and a male individual of red …

DNA-informed breeding of rosaceous crops: promises, progress and prospects

CP Peace - Horticulture research, 2017 - academic.oup.com
Crops of the Rosaceae family provide valuable contributions to rural economies and human
health and enjoyment. Sustained solutions to production challenges and market demands …