Coordination of microbial metabolism

V Chubukov, L Gerosa, K Kochanowski… - Nature Reviews …, 2014 - nature.com
Beyond fuelling cellular activities with building blocks and energy, metabolism also
integrates environmental conditions into intracellular signals. The underlying regulatory …

Advancing metabolic models with kinetic information

H Link, D Christodoulou, U Sauer - Current opinion in biotechnology, 2014 - Elsevier
Highlights•Kinetic models are crucial to understand complex dynamic processes.•Not all
model parameters need to be known precisely due to overlapping regulatory …

Improving fatty acids production by engineering dynamic pathway regulation and metabolic control

P Xu, L Li, F Zhang… - Proceedings of the …, 2014 - National Acad Sciences
Global energy demand and environmental concerns have stimulated increasing efforts to
produce carbon-neutral fuels directly from renewable resources. Microbially derived …

Metabolic profiling of cancer cells reveals genome-wide crosstalk between transcriptional regulators and metabolism

K Ortmayr, S Dubuis, M Zampieri - Nature communications, 2019 - nature.com
Transcriptional reprogramming of cellular metabolism is a hallmark of cancer. However,
systematic approaches to study the role of transcriptional regulators (TRs) in mediating …

Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP

A Bren, JO Park, BD Towbin, E Dekel, JD Rabinowitz… - Scientific reports, 2016 - nature.com
In most conditions, glucose is the best carbon source for E. coli: it provides faster growth
than other sugars and is consumed first in sugar mixtures. Here we identify conditions in …

Negative feedback regulation of fatty acid production based on a malonyl-CoA sensor–actuator

D Liu, Y Xiao, BS Evans, F Zhang - ACS synthetic biology, 2015 - ACS Publications
Engineering metabolic biosynthetic pathways has enabled the microbial production of many
useful chemicals. However, pathway productivities and yields are often limited by metabolic …

Transcriptional regulation is insufficient to explain substrate‐induced flux changes in Bacillus subtilis

V Chubukov, M Uhr, L Le Chat, RJ Kleijn… - Molecular systems …, 2013 - embopress.org
One of the key ways in which microbes are thought to regulate their metabolism is by
modulating the availability of enzymes through transcriptional regulation. However, the …

Design of four small-molecule-inducible systems in the yeast chromosome, applied to optimize terpene biosynthesis

JH Park, MC Bassalo, GM Lin, Y Chen… - ACS synthetic …, 2023 - ACS Publications
The optimization of cellular functions often requires the balancing of gene expression, but
the physical construction and screening of alternative designs are costly and time …

[PDF][PDF] Allosteric feedback inhibition enables robust amino acid biosynthesis in E. coli by enforcing enzyme overabundance

T Sander, N Farke, C Diehl, M Kuntz, T Glatter, H Link - Cell systems, 2019 - cell.com
Microbes must ensure robust amino acid metabolism in the face of external and internal
perturbations. This robustness is thought to emerge from regulatory interactions in metabolic …

Dissecting specific and global transcriptional regulation of bacterial gene expression

L Gerosa, K Kochanowski, M Heinemann… - Molecular systems …, 2013 - embopress.org
Gene expression is regulated by specific transcriptional circuits but also by the global
expression machinery as a function of growth. Simultaneous specific and global regulation …