Alternative cleavage and polyadenylation in health and disease

AJ Gruber, M Zavolan - Nature Reviews Genetics, 2019 - nature.com
Most human genes have multiple sites at which RNA 3ʹ end cleavage and polyadenylation
can occur, enabling the expression of distinct transcript isoforms under different conditions …

[HTML][HTML] Where genotype is not predictive of phenotype: towards an understanding of the molecular basis of reduced penetrance in human inherited disease

DN Cooper, M Krawczak, C Polychronakos… - Human genetics, 2013 - Springer
Some individuals with a particular disease-causing mutation or genotype fail to express
most if not all features of the disease in question, a phenomenon that is known as 'reduced …

[HTML][HTML] Mechanisms and consequences of alternative polyadenylation

DC Di Giammartino, K Nishida, JL Manley - Molecular cell, 2011 - cell.com
Alternative polyadenylation (APA) is emerging as a widespread mechanism used to control
gene expression. Like alternative splicing, usage of alternative poly (A) sites allows a single …

[HTML][HTML] Ending the message: poly (A) signals then and now

NJ Proudfoot - Genes & development, 2011 - genesdev.cshlp.org
Abstract Polyadenylation [poly (A)] signals (PAS) are a defining feature of eukaryotic protein-
coding genes. The central sequence motif AAUAAA was identified in the mid-1970s and …

[HTML][HTML] A deep neural network for predicting and engineering alternative polyadenylation

N Bogard, J Linder, AB Rosenberg, G Seelig - Cell, 2019 - cell.com
Alternative polyadenylation (APA) is a major driver of transcriptome diversity in human cells.
Here, we use deep learning to predict APA from DNA sequence alone. We trained our …

Human and mouse proteases: a comparative genomic approach

XS Puente, LM Sánchez, CM Overall… - Nature Reviews …, 2003 - nature.com
The availability of the human and mouse genome sequences has allowed the identification
and comparison of their respective degradomes—the complete repertoire of proteases that …

[HTML][HTML] Context-specific regulation and function of mRNA alternative polyadenylation

S Mitschka, C Mayr - Nature Reviews Molecular Cell Biology, 2022 - nature.com
Alternative cleavage and polyadenylation (APA) is a widespread mechanism to generate
mRNA isoforms with alternative 3′ untranslated regions (UTRs). The expression of …

Risk factors and clinical presentation of portal vein thrombosis in patients with liver cirrhosis

L Amitrano, MA Guardascione, V Brancaccio… - Journal of …, 2004 - Elsevier
BACKGROUND/AIMS: Portal vein thrombosis in patients with liver cirrhosis is usually
associated to hepatocellular carcinoma. Clinical presentation of non-neoplastic portal vein …

[HTML][HTML] Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation

F Ozsolak, P Kapranov, S Foissac, SW Kim… - Cell, 2010 - cell.com
The emerging discoveries on the link between polyadenylation and disease states underline
the need to fully characterize genome-wide polyadenylation states. Here, we report …

[HTML][HTML] Improvement of the transient expression system for production of recombinant proteins in plants

T Yamamoto, K Hoshikawa, K Ezura, R Okazawa… - Scientific reports, 2018 - nature.com
An efficient and high yielding expression system is required to produce recombinant
proteins. Furthermore, the transient expression system can be used to identify the …