Frameshifting RNA pseudoknots: structure and mechanism

DP Giedroc, PV Cornish - Virus research, 2009 - Elsevier
Programmed ribosomal frameshifting (PRF) is one of the multiple translational recoding
processes that fundamentally alters triplet decoding of the messenger RNA by the …

Programmed ribosomal frameshifting in HIV-1 and the SARS–CoV

I Brierley, FJ Dos Ramos - Virus research, 2006 - Elsevier
Ribosomal frameshifting is a mechanism of gene expression used by several RNA viruses to
express replicase enzymes. This article focuses on frameshifting in two human pathogens …

Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design

HH Gan, S Pasquali, T Schlick - Nucleic acids research, 2003 - academic.oup.com
Understanding the structural repertoire of RNA is crucial for RNA genomics research. Yet
current methods for finding novel RNAs are limited to small or known RNA families. To …

Exploring RNA structural codes with SHAPE chemistry

KM Weeks, DM Mauger - Accounts of chemical research, 2011 - ACS Publications
RNA is the central conduit for gene expression. This role depends on an ability to encode
information at two levels: in its linear sequence and in the complex structures RNA can form …

The packaging and maturation of the HIV-1 Pol proteins

M Hill, G Tachedjian, J Mak - Current HIV research, 2005 - ingentaconnect.com
The Pol protein of human immunodeficiency virus type 1 (HIV-1) harbours the viral enzymes
critical for viral replication; protease (PR), reverse transcriptase (RT), and integrase (IN). PR …

An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae

JW Harger, JD Dinman - Rna, 2003 - rnajournal.cshlp.org
A new in vivo assay system has been developed to study programmed frameshifting in the
yeast Saccharomyces cerevisiae. Frameshift signals are inserted between the Renilla and …

The 9-Å solution: How mRNA pseudoknots promote efficient programmed− 1 ribosomal frameshifting

EP Plant, KLM Jacobs, JW Harger, A Meskauskas… - Rna, 2003 - rnajournal.cshlp.org
There is something special about mRNA pseudoknots that allows them to elicit efficient
levels of programmed− 1 ribosomal frameshifting. Here, we present a synthesis of recent …

A− 1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA

JK Barry, WA Miller - … of the National Academy of Sciences, 2002 - National Acad Sciences
Programmed− 1 ribosomal frameshifting is necessary for translation of the polymerase
genes of many viruses. In addition to the consensus elements in the mRNA around the …

Characterization of the frameshift stimulatory signal controlling a programmed–1 ribosomal frameshift in the human immunodeficiency virus type 1

D Dulude, M Baril, L Brakier‐Gingras - Nucleic acids research, 2002 - academic.oup.com
Abstract Synthesis of the Gag‐Pol protein of the human immunodeficiency virus type 1 (HIV‐
1) requires a programmed–1 ribosomal frameshifting when ribosomes translate the …

The human immunodeficiency virus type 1 ribosomal frameshifting site is an invariant sequence determinant and an important target for antiviral therapy

P Biswas, X Jiang, AL Pacchia, JP Dougherty… - Journal of …, 2004 - Am Soc Microbiol
Human immunodeficiency virus type 1 (HIV-1) utilizes a distinctive form of gene regulation
as part of its life cycle, termed programmed− 1 ribosomal frameshifting, to produce the …