Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations

CJ Castelle, CT Brown, K Anantharaman… - Nature Reviews …, 2018 - nature.com
Candidate phyla radiation (CPR) bacteria and DPANN (an acronym of the names of the first
included phyla) archaea are massive radiations of organisms that are widely distributed …

Fermented food products in the era of globalization: Tradition meets biotechnology innovations

A Galimberti, A Bruno, G Agostinetto… - Current Opinion in …, 2021 - Elsevier
Highlights•Fermented food is strongly connected with the territory of origin and
tradition.•Multi-omics profiling unveils the microbial signature of food typicalities.•Machine …

Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems

C He, R Keren, ML Whittaker, IF Farag, JA Doudna… - Nature …, 2021 - nature.com
Candidate phyla radiation (CPR) bacteria and DPANN archaea are unisolated, small-celled
symbionts that are often detected in groundwater. The effects of groundwater geochemistry …

A network approach to elucidate and prioritize microbial dark matter in microbial communities

T Zamkovaya, JS Foster, V de Crécy-Lagard… - The ISME …, 2021 - academic.oup.com
Microbes compose most of the biomass on the planet, yet the majority of taxa remain
uncharacterized. These unknown microbes, often referred to as “microbial dark matter,” …

Predominance of Cand. Patescibacteria in Groundwater Is Caused by Their Preferential Mobilization From Soils and Flourishing Under Oligotrophic Conditions

M Herrmann, CE Wegner, M Taubert… - Frontiers in …, 2019 - frontiersin.org
Despite the widely observed predominance of Cand. Patescibacteria in subsurface
communities, their input source and ecophysiology are poorly understood. Here we study …

A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments

CD Vavourakis, AS Andrei, M Mehrshad, R Ghai… - Microbiome, 2018 - Springer
Background Hypersaline soda lakes are characterized by extreme high soluble carbonate
alkalinity. Despite the high pH and salt content, highly diverse microbial communities are …

Aedes spp. and Their Microbiota: A Review

F Scolari, M Casiraghi, M Bonizzoni - Frontiers in microbiology, 2019 - frontiersin.org
Aedes spp. are a major public health concern due to their ability to be efficient vectors of
dengue, Chikungunya, Zika, and other arboviruses. With limited vaccines available and no …

Geographical and cultivar features differentiate grape microbiota in Northern Italy and Spain vineyards

V Mezzasalma, A Sandionigi, L Guzzetti… - Frontiers in …, 2018 - frontiersin.org
Recent studies have highlighted the role of the grapevine microbiome in addressing a wide
panel of features, ranging from the signature of field origin to wine quality. Although the …

[HTML][HTML] Monitoring groundwater quality with real-time data, stable water isotopes, and microbial community analysis: A comparison with conventional methods

KJ Lyons, J Ikonen, AM Hokajärvi, T Räsänen… - Science of the Total …, 2023 - Elsevier
Groundwater provides much of the world's potable water. Nevertheless, groundwater quality
monitoring programmes often rely on a sporadic, slow, and narrowly focused combination of …

Microbial dark matter investigations: how microbial studies transform biological knowledge and empirically sketch a logic of scientific discovery

G Bernard, JS Pathmanathan, R Lannes… - Genome biology and …, 2018 - academic.oup.com
Microbes are the oldest and most widespread, phylogenetically and metabolically diverse
life forms on Earth. However, they have been discovered only 334 years ago, and their …