Structure and function of type II restriction endonucleases

A Pingoud, A Jeltsch - Nucleic acids research, 2001 - academic.oup.com
More than 3000 type II restriction endonucleases have been discovered. They recognize
short, usually palindromic, sequences of 4–8 bp and, in the presence of Mg2+, cleave the …

The other face of restriction: modification-dependent enzymes

WAM Loenen, EA Raleigh - Nucleic acids research, 2014 - academic.oup.com
The 1952 observation of host-induced non-hereditary variation in bacteriophages by
Salvador Luria and Mary Human led to the discovery in the 1960s of modifying enzymes that …

Nucleoside triphosphate-dependent restriction enzymes

DTF Dryden, NE Murray, DN Rao - Nucleic acids research, 2001 - academic.oup.com
The known nucleoside triphosphate-dependent restriction enzymes are hetero-oligomeric
proteins that behave as molecular machines in response to their target sequences. They …

The MspJI family of modification-dependent restriction endonucleases for epigenetic studies

D Cohen-Karni, D Xu, L Apone… - Proceedings of the …, 2011 - National Acad Sciences
MspJI is a novel modification-dependent restriction endonuclease that cleaves at a fixed
distance away from the modification site. Here, we present the biochemical characterization …

Analysis of genes and genomes

RJ Reece - 2004 - library.wur.nl
This book offers an introduction to the theoretical and practical basis of genetic engineering,
gene cloning and molecular biology. All aspects of genetic engineering in the post-genomic …

Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays

B Lin, Z Wang, GJ Vora, JA Thornton… - Genome …, 2006 - genome.cshlp.org
The exponential growth of pathogen nucleic acid sequences available in public domain
databases has invited their direct use in pathogen detection, identification, and surveillance …

Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing

V Anantharaman, LM Iyer, L Aravind - Molecular BioSystems, 2012 - pubs.rsc.org
The mode of action of the bacterial ter cluster and TelA genes, implicated in natural
resistance to tellurite and other xenobiotic toxic compounds, pore-forming colicins and …

Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets

JM Ordway, JA Bedell, RW Citek, A Nunberg… - …, 2006 - academic.oup.com
Using a unique microarray platform for cytosine methylation profiling, the DNA methylation
landscape of the human genome was monitored at more than 21 000 sites, including 79% of …

The Neuron Navigators: Structure, function, and evolutionary history

RM Powers, RF Hevner, S Halpain - Frontiers in Molecular …, 2023 - frontiersin.org
Neuron navigators (Navigators) are cytoskeletal-associated proteins important for neuron
migration, neurite growth, and axon guidance, but they also function more widely in other …

Accurate estimation of 5-methylcytosine in mammalian mitochondrial DNA

S Matsuda, T Yasukawa, Y Sakaguchi, K Ichiyanagi… - Scientific reports, 2018 - nature.com
Abstract Whilst 5-methylcytosine (5mC) is a major epigenetic mark in the nuclear DNA in
mammals, whether or not mitochondrial DNA (mtDNA) receives 5mC modification remains …