[HTML][HTML] What is a cell type and how to define it?
H Zeng - Cell, 2022 - cell.com
Cell types are the basic functional units of an organism. Cell types exhibit diverse
phenotypic properties at multiple levels, making them challenging to define, categorize, and …
phenotypic properties at multiple levels, making them challenging to define, categorize, and …
[HTML][HTML] New opportunities and challenges of natural products research: When target identification meets single-cell multiomics
Y Zhu, Z Ouyang, H Du, M Wang, J Wang, H Sun… - … Pharmaceutica Sinica B, 2022 - Elsevier
Natural products, and especially the active ingredients found in traditional Chinese medicine
(TCM), have a thousand-year-long history of clinical use and a strong theoretical basis in …
(TCM), have a thousand-year-long history of clinical use and a strong theoretical basis in …
scGPT: toward building a foundation model for single-cell multi-omics using generative AI
Generative pretrained models have achieved remarkable success in various domains such
as language and computer vision. Specifically, the combination of large-scale diverse …
as language and computer vision. Specifically, the combination of large-scale diverse …
Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution
Spatial transcriptomics approaches have substantially advanced our capacity to detect the
spatial distribution of RNA transcripts in tissues, yet it remains challenging to characterize …
spatial distribution of RNA transcripts in tissues, yet it remains challenging to characterize …
[HTML][HTML] Tissue-resident FOLR2+ macrophages associate with CD8+ T cell infiltration in human breast cancer
RN Ramos, Y Missolo-Koussou, Y Gerber-Ferder… - Cell, 2022 - cell.com
Macrophage infiltration is a hallmark of solid cancers, and overall macrophage infiltration
correlates with lower patient survival and resistance to therapy. Tumor-associated …
correlates with lower patient survival and resistance to therapy. Tumor-associated …
A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease
Late-onset Alzheimer's disease is a prevalent age-related polygenic disease that accounts
for 50–70% of dementia cases. Currently, only a fraction of the genetic variants underlying …
for 50–70% of dementia cases. Currently, only a fraction of the genetic variants underlying …
[HTML][HTML] Mapping single-cell data to reference atlases by transfer learning
Large single-cell atlases are now routinely generated to serve as references for analysis of
smaller-scale studies. Yet learning from reference data is complicated by batch effects …
smaller-scale studies. Yet learning from reference data is complicated by batch effects …
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
H Li, J Janssens, M De Waegeneer, SS Kolluru… - Science, 2022 - science.org
For more than 100 years, the fruit fly Drosophila melanogaster has been one of the most
studied model organisms. Here, we present a single-cell atlas of the adult fly, Tabula …
studied model organisms. Here, we present a single-cell atlas of the adult fly, Tabula …
[HTML][HTML] Deciphering cell–cell interactions and communication from gene expression
E Armingol, A Officer, O Harismendy… - Nature Reviews …, 2021 - nature.com
Cell–cell interactions orchestrate organismal development, homeostasis and single-cell
functions. When cells do not properly interact or improperly decode molecular messages …
functions. When cells do not properly interact or improperly decode molecular messages …
[HTML][HTML] Vascular endothelial cell development and diversity
E Trimm, K Red-Horse - Nature Reviews Cardiology, 2023 - nature.com
Vascular endothelial cells form the inner layer of blood vessels where they have a key role
in the development and maintenance of the functional circulatory system and provide …
in the development and maintenance of the functional circulatory system and provide …