Nanopores in graphene and other 2D materials: a decade's journey toward sequencing

H Qiu, W Zhou, W Guo - ACS nano, 2021 - ACS Publications
Nanopore techniques offer a low-cost, label-free, and high-throughput platform that could be
used in single-molecule biosensing and in particular DNA sequencing. Since 2010 …

Characterization of lipid–protein interactions and lipid-mediated modulation of membrane protein function through molecular simulation

MP Muller, T Jiang, C Sun, M Lihan, S Pant… - Chemical …, 2019 - ACS Publications
The cellular membrane constitutes one of the most fundamental compartments of a living
cell, where key processes such as selective transport of material and exchange of …

An overview of molecular modeling for drug discovery with specific illustrative examples of applications

M Aminpour, C Montemagno, JA Tuszynski - Molecules, 2019 - mdpi.com
In this paper we review the current status of high-performance computing applications in the
general area of drug discovery. We provide an introduction to the methodologies applied at …

[HTML][HTML] Interfacing graphene-based materials with neural cells

M Bramini, G Alberini, E Colombo… - Frontiers in systems …, 2018 - frontiersin.org
The scientific community has witnessed an exponential increase in the applications of
graphene and graphene-based materials in a wide range of fields, from engineering to …

Geometrical effect in 2D nanopores

K Liu, M Lihter, A Sarathy, S Caneva, H Qiu… - Nano …, 2017 - ACS Publications
A long-standing problem in the application of solid-state nanopores is the lack of the precise
control over the geometry of artificially formed pores compared to the well-defined geometry …

Nanopore electrochemistry: a nexus for molecular control of electron transfer reactions

K Fu, PW Bohn - ACS central science, 2018 - ACS Publications
Pore-based structures occur widely in living organisms. Ion channels embedded in cell
membranes, for example, provide pathways, where electron and proton transfer are coupled …

Molecular insights into distinct detection properties of α-hemolysin, MspA, CsgG, and aerolysin nanopore sensors

W Zhou, H Qiu, Y Guo, W Guo - The Journal of Physical Chemistry …, 2020 - ACS Publications
Protein nanopores have been widely used as single-molecule sensors for the detection and
characterization of biological polymers such as DNA, RNA, and polypeptides. A variety of …

Orientational Binding of DNA Guided by the C2N Template

Z Gu, L Zhao, S Liu, G Duan, JM Perez-Aguilar, J Luo… - ACS …, 2017 - ACS Publications
A detailed understanding of the interactions between biomolecules and nanomaterial
surfaces is critical for the development of biomedical applications of these nanomaterials …

Detection and mapping of DNA methylation with 2D material nanopores

H Qiu, A Sarathy, K Schulten, JP Leburton - npj 2D Materials and …, 2017 - nature.com
DNA methylation is an epigenetic modification involving the addition of a methyl group to
DNA, which is heavily involved in gene expression and regulation, thereby critical to the …

Two Detection Modes of Nanoslit Sensing Based on Planar Heterostructure of Graphene/Hexagonal Boron Nitride

C Huang, Z Li, X Zhu, X Ma, N Li, J Fan - ACS nano, 2023 - ACS Publications
Solid-state nanopore sequencing is now confronted with problems of stochastic pore
clogging and too fast speed during the DNA permeation through a nanopore, although this …