Next-generation sequence assembly: four stages of data processing and computational challenges
S El-Metwally, T Hamza, M Zakaria… - PLoS computational …, 2013 - journals.plos.org
Decoding DNA symbols using next-generation sequencers was a major breakthrough in
genomic research. Despite the many advantages of next-generation sequencers, eg, the …
genomic research. Despite the many advantages of next-generation sequencers, eg, the …
Next-generation sequencing technologies and their impact on microbial genomics
BM Forde, PW O'Toole - Briefings in functional genomics, 2013 - academic.oup.com
Next-generation sequencing technologies have had a dramatic impact in the field of
genomic research through the provision of a low cost, high-throughput alternative to …
genomic research through the provision of a low cost, high-throughput alternative to …
A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes
Background Highly parallel,'second generation'sequencing technologies have rapidly
expanded the number of bacterial whole genome sequences available for study, permitting …
expanded the number of bacterial whole genome sequences available for study, permitting …
Cluster editing
S Böcker, J Baumbach - Conference on Computability in Europe, 2013 - Springer
Abstract The Cluster Editing problem asks to transform a graph into a disjoint union of
cliques using a minimum number of edge modifications. Although the problem has been …
cliques using a minimum number of edge modifications. Although the problem has been …
The detection of KPC-2, NDM-1, and VIM-2 carbapenemases in international clones isolated from fresh vegetables highlights an emerging food safety issue
Resistance to carbapenems emerged in clinical settings and has rapidly spread to other
sectors, such as food and the environment, representing a One Health problem. In this …
sectors, such as food and the environment, representing a One Health problem. In this …
Genetic plurality of blaKPC-2-harboring plasmids in high-risk clones of Klebsiella pneumoniae of environmental origin
International high-risk clones of Klebsiella pneumoniae are important human pathogens that
are spreading to the environment. In the COVID-19 pandemic scenario, the frequency of …
are spreading to the environment. In the COVID-19 pandemic scenario, the frequency of …
Convergence of mcr-1 and broad-spectrum β-lactamase genes in Escherichia coli strains from the environmental sector
The mcr-type gene encodes the main plasmid-mediated mechanism of colistin resistance
and has been reported in several bacterial species obtained from different sources …
and has been reported in several bacterial species obtained from different sources …
CoryneRegNet 6.0—Updated database content, new analysis methods and novel features focusing on community demands
Post-genomic analysis techniques such as next-generation sequencing have produced vast
amounts of data about micro organisms including genetic sequences, their functional …
amounts of data about micro organisms including genetic sequences, their functional …
Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica
AR Carneiro, RTJ Ramos, H Dall'Agnol, AC Pinto… - 2012 - Am Soc Microbiol
Exiguobacterium antarcticum is a psychotropic bacterium isolated for the first time from
microbial mats of Lake Fryxell in Antarctica. Many organisms of the genus Exiguobacterium …
microbial mats of Lake Fryxell in Antarctica. Many organisms of the genus Exiguobacterium …
Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production
Corynebacterium pseudotuberculosis is the causative agent of several veterinary diseases
in a broad range of economically important hosts, which can vary from caseous …
in a broad range of economically important hosts, which can vary from caseous …