Use of molecular docking computational tools in drug discovery
F Stanzione, I Giangreco, JC Cole - Progress in medicinal chemistry, 2021 - Elsevier
Molecular docking has become an important component of the drug discovery process.
Since first being developed in the 1980s, advancements in the power of computer hardware …
Since first being developed in the 1980s, advancements in the power of computer hardware …
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review
P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …
methods and in rational drug design, the increase in approved drugs in the past decade did …
Molecular docking-based computational platform for high-throughput virtual screening
B Zhang, H Li, K Yu, Z Jin - CCF Transactions on High Performance …, 2022 - Springer
Abstract Structure-based virtual screening is a key, routine computational method in
computer-aided drug design. Such screening can be used to identify potentially highly active …
computer-aided drug design. Such screening can be used to identify potentially highly active …
De novo molecule design through the molecular generative model conditioned by 3D information of protein binding sites
De novo molecule design through the molecular generative model has gained increasing
attention in recent years. Here, a novel generative model was proposed by integrating the …
attention in recent years. Here, a novel generative model was proposed by integrating the …
Structure-based druggability assessment—identifying suitable targets for small molecule therapeutics
A target is druggable if it can be modulated in vivo by a drug-like molecule. The general
properties of oral drugs are summarized by the 'rule of 5'which specifies parameters related …
properties of oral drugs are summarized by the 'rule of 5'which specifies parameters related …
An enumerative algorithm for de novo design of proteins with diverse pocket structures
To create new enzymes and biosensors from scratch, precise control over the structure of
small-molecule binding sites is of paramount importance, but systematically designing …
small-molecule binding sites is of paramount importance, but systematically designing …
Study and design of stability in GH5 cellulases
Thermostable enzymes that hydrolyze lignocellulosic materials provide potential
advantages in process configuration and enhancement of production efficiency over their …
advantages in process configuration and enhancement of production efficiency over their …
Mechanistically guided workflow for relating complex reactive site topologies to catalyst performance in C–H functionalization reactions
Leveraging congested catalyst scaffolds has emerged as a key strategy for altering innate
substrate site-selectivity profiles in C–H functionalization reactions. Similar to enzyme active …
substrate site-selectivity profiles in C–H functionalization reactions. Similar to enzyme active …
istar: A web platform for large-scale protein-ligand docking
Protein-ligand docking is a key computational method in the design of starting points for the
drug discovery process. We are motivated by the desire to automate large-scale docking …
drug discovery process. We are motivated by the desire to automate large-scale docking …
Structural and free energy landscape of novel mutations in ribosomal protein S1 (rpsA) associated with pyrazinamide resistance
Resistance to key first-line drugs is a major hurdle to achieve the global end tuberculosis
(TB) targets. A prodrug, pyrazinamide (PZA) is the only drug, effective in latent TB …
(TB) targets. A prodrug, pyrazinamide (PZA) is the only drug, effective in latent TB …