Assembly of long, error-prone reads using repeat graphs

M Kolmogorov, J Yuan, Y Lin, PA Pevzner - Nature biotechnology, 2019 - nature.com
Accurate genome assembly is hampered by repetitive regions. Although long single
molecule sequencing reads are better able to resolve genomic repeats than short-read data …

[HTML][HTML] An evolutionary perspective on plasmid lifestyle modes

N Hülter, J Ilhan, T Wein, AS Kadibalban… - Current opinion in …, 2017 - Elsevier
Highlights•Plasmid evolution reviewed from the perspective of plasmids.•Mobility, stability,
and indispensability largely determine plasmid lifestyles.•Changes in plasmid traits facilitate …

oriC-encoded instructions for the initiation of bacterial chromosome replication

M Wolański, R Donczew, A Zawilak-Pawlik… - Frontiers in …, 2015 - frontiersin.org
Replication of the bacterial chromosome initiates at a single origin of replication that is
called oriC. This occurs via the concerted action of numerous proteins, including DnaA …

Xer site specific recombination: double and single recombinase systems

F Castillo, A Benmohamed, G Szatmari - Frontiers in microbiology, 2017 - frontiersin.org
The separation and segregation of newly replicated bacterial chromosomes can be
constrained by the formation of circular chromosome dimers caused by crossing over during …

Bacterial cell division: nonmodels poised to take the spotlight

PJ Eswara, KS Ramamurthi - Annual Review of Microbiology, 2017 - annualreviews.org
The last three decades have witnessed an explosion of discoveries about the mechanistic
details of binary fission in model bacteria such as Escherichia coli, Bacillus subtilis, and …

Conformation and dynamic interactions of the multipartite genome in Agrobacterium tumefaciens

Z Ren, Q Liao, X Karaboja, IS Barton… - Proceedings of the …, 2022 - National Acad Sciences
Bacterial species from diverse phyla contain multiple replicons, yet how these multipartite
genomes are organized and segregated during the cell cycle remains poorly understood …

DNA-relay mechanism is sufficient to explain ParA-dependent intracellular transport and patterning of single and multiple cargos

IV Surovtsev, M Campos… - Proceedings of the …, 2016 - National Acad Sciences
Spatial ordering of macromolecular components inside cells is important for cellular
physiology and replication. In bacteria, ParA/B systems are known to generate various …

Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge

SJ McIlroy, SM Karst, M Nierychlo… - The ISME …, 2016 - academic.oup.com
Overgrowth of filamentous bacteria in activated sludge wastewater treatment plants
(WWTPs) leads to impaired sludge settleability, a condition known as bulking, which is a …

Kinetic principles of ParA2-ATP cycling guide dynamic subcellular localizations in Vibrio cholerae

SS Chodha, AC Brooks, PJ Davis… - Nucleic Acids …, 2023 - academic.oup.com
Dynamic protein gradients are exploited for the spatial organization and segregation of
replicated chromosomes. However, mechanisms of protein gradient formation and how that …

Chromosome I Controls Chromosome II Replication in Vibrio cholerae

JH Baek, DK Chattoraj - PLoS genetics, 2014 - journals.plos.org
Control of chromosome replication involves a common set of regulators in eukaryotes,
whereas bacteria with divided genomes use chromosome-specific regulators. How bacterial …