Assembly of long, error-prone reads using repeat graphs
Accurate genome assembly is hampered by repetitive regions. Although long single
molecule sequencing reads are better able to resolve genomic repeats than short-read data …
molecule sequencing reads are better able to resolve genomic repeats than short-read data …
[HTML][HTML] An evolutionary perspective on plasmid lifestyle modes
Highlights•Plasmid evolution reviewed from the perspective of plasmids.•Mobility, stability,
and indispensability largely determine plasmid lifestyles.•Changes in plasmid traits facilitate …
and indispensability largely determine plasmid lifestyles.•Changes in plasmid traits facilitate …
oriC-encoded instructions for the initiation of bacterial chromosome replication
M Wolański, R Donczew, A Zawilak-Pawlik… - Frontiers in …, 2015 - frontiersin.org
Replication of the bacterial chromosome initiates at a single origin of replication that is
called oriC. This occurs via the concerted action of numerous proteins, including DnaA …
called oriC. This occurs via the concerted action of numerous proteins, including DnaA …
Xer site specific recombination: double and single recombinase systems
F Castillo, A Benmohamed, G Szatmari - Frontiers in microbiology, 2017 - frontiersin.org
The separation and segregation of newly replicated bacterial chromosomes can be
constrained by the formation of circular chromosome dimers caused by crossing over during …
constrained by the formation of circular chromosome dimers caused by crossing over during …
Bacterial cell division: nonmodels poised to take the spotlight
PJ Eswara, KS Ramamurthi - Annual Review of Microbiology, 2017 - annualreviews.org
The last three decades have witnessed an explosion of discoveries about the mechanistic
details of binary fission in model bacteria such as Escherichia coli, Bacillus subtilis, and …
details of binary fission in model bacteria such as Escherichia coli, Bacillus subtilis, and …
Conformation and dynamic interactions of the multipartite genome in Agrobacterium tumefaciens
Z Ren, Q Liao, X Karaboja, IS Barton… - Proceedings of the …, 2022 - National Acad Sciences
Bacterial species from diverse phyla contain multiple replicons, yet how these multipartite
genomes are organized and segregated during the cell cycle remains poorly understood …
genomes are organized and segregated during the cell cycle remains poorly understood …
DNA-relay mechanism is sufficient to explain ParA-dependent intracellular transport and patterning of single and multiple cargos
IV Surovtsev, M Campos… - Proceedings of the …, 2016 - National Acad Sciences
Spatial ordering of macromolecular components inside cells is important for cellular
physiology and replication. In bacteria, ParA/B systems are known to generate various …
physiology and replication. In bacteria, ParA/B systems are known to generate various …
Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge
Overgrowth of filamentous bacteria in activated sludge wastewater treatment plants
(WWTPs) leads to impaired sludge settleability, a condition known as bulking, which is a …
(WWTPs) leads to impaired sludge settleability, a condition known as bulking, which is a …
Kinetic principles of ParA2-ATP cycling guide dynamic subcellular localizations in Vibrio cholerae
SS Chodha, AC Brooks, PJ Davis… - Nucleic Acids …, 2023 - academic.oup.com
Dynamic protein gradients are exploited for the spatial organization and segregation of
replicated chromosomes. However, mechanisms of protein gradient formation and how that …
replicated chromosomes. However, mechanisms of protein gradient formation and how that …
Chromosome I Controls Chromosome II Replication in Vibrio cholerae
JH Baek, DK Chattoraj - PLoS genetics, 2014 - journals.plos.org
Control of chromosome replication involves a common set of regulators in eukaryotes,
whereas bacteria with divided genomes use chromosome-specific regulators. How bacterial …
whereas bacteria with divided genomes use chromosome-specific regulators. How bacterial …