[HTML][HTML] Forecasting COVID-19 new cases using deep learning methods

L Xu, R Magar, AB Farimani - Computers in biology and medicine, 2022 - Elsevier
After nearly two years since the first identification of SARS-CoV-2 virus, the surge in cases
because of virus mutations is a cause of grave public health concern across the globe. As a …

SARS-CoV-2: The Interplay Between Evolution and Host Immunity

JB Case, S Jain, MS Suthar… - Annual Review of …, 2024 - annualreviews.org
The persistence of SARS-CoV-2 infections at a global level reflects the repeated emergence
of variant strains encoding unique constellations of mutations. These variants have been …

iRNA-ac4C: a novel computational method for effectively detecting N4-acetylcytidine sites in human mRNA

W Su, XQ Xie, XW Liu, D Gao, CY Ma, H Zulfiqar… - International Journal of …, 2023 - Elsevier
Abstract RNA N4-acetylcytidine (ac4C) is the acetylation of cytidine at the nitrogen-4
position, which is a highly conserved RNA modification and involves a variety of biological …

Early warning of emerging infectious diseases based on multimodal data

H Ren, Y Ling, R Cao, Z Wang, Y Li, T Huang - Biosafety and health, 2023 - mednexus.org
The coronavirus disease 2019 (COVID-19) pandemic has dramatically increased the
awareness of emerging infectious diseases. The advancement of multiomics analysis …

CollagenTransformer: end-to-end transformer model to predict thermal stability of collagen triple helices using an NLP approach

E Khare, C Gonzalez-Obeso, DL Kaplan… - ACS Biomaterials …, 2022 - ACS Publications
Collagen is one of the most important structural proteins in biology, and its structural
hierarchy plays a crucial role in many mechanically important biomaterials. Here, we …

A mutual neighbor-based clustering method and its medical applications

J Chen, X Zhu, H Liu - Computers in Biology and Medicine, 2022 - Elsevier
Clustering analysis has been widely used in various real-world applications. Due to the
simplicity of K-means, it has become the most popular clustering analysis technique in …

Immunoinformatics analysis of sars-cov-2 orf1ab polyproteins to identify promiscuous and highly conserved t-cell epitopes to formulate vaccine for indonesia and the …

M Gustiananda, BP Sulistyo, D Agustriawan, S Andarini - Vaccines, 2021 - mdpi.com
SARS-CoV-2 and its variants caused the COVID-19 pandemic. Vaccines that target
conserved regions of SARS-CoV-2 and stimulate protective T-cell responses are important …

Substitution spectra of SARS-CoV-2 genome from Pakistan reveals insights into the evolution of variants across the pandemic

J Ashraf, SARS Bukhari, A Kanji, T Iqbal, M Yameen… - Scientific Reports, 2023 - nature.com
Changing morbidity and mortality due to COVID-19 across the pandemic has been linked
with factors such as the emergence of SARS-CoV-2 variants and vaccination. Mutations in …

TEMPO: A transformer-based mutation prediction framework for SARS-CoV-2 evolution

B Zhou, H Zhou, X Zhang, X Xu, Y Chai, Z Zheng… - Computers in Biology …, 2023 - Elsevier
The widespread of SARS-CoV-2 presents a significant threat to human society, as well as
public health and economic development. Extensive efforts have been undertaken to battle …

Luteolin potentially treating prostate cancer and COVID-19 analyzed by the bioinformatics approach: Clinical findings and drug targets

Y Ye, Z Huang, M Chen, Y Mo, Z Mo - Frontiers in Endocrinology, 2022 - frontiersin.org
Coronavirus disease 2019 (COVID-19) is a serious epidemic, characterized by potential
mutation and can bring about poor vaccine efficiency. It is evidenced that patients with …