Array programming with NumPy

CR Harris, KJ Millman, SJ Van Der Walt, R Gommers… - Nature, 2020 - nature.com
Array programming provides a powerful, compact and expressive syntax for accessing,
manipulating and operating on data in vectors, matrices and higher-dimensional arrays …

[HTML][HTML] SciPy 1.0: fundamental algorithms for scientific computing in Python

P Virtanen, R Gommers, TE Oliphant, M Haberland… - Nature …, 2020 - nature.com
SciPy is an open-source scientific computing library for the Python programming language.
Since its initial release in 2001, SciPy has become a de facto standard for leveraging …

Assessing and tuning brain decoders: cross-validation, caveats, and guidelines

G Varoquaux, PR Raamana, DA Engemann… - NeuroImage, 2017 - Elsevier
Decoding, ie prediction from brain images or signals, calls for empirical evaluation of its
predictive power. Such evaluation is achieved via cross-validation, a method also used to …

[HTML][HTML] Machine learning for neuroimaging with scikit-learn

A Abraham, F Pedregosa, M Eickenberg… - Frontiers in …, 2014 - frontiersin.org
Statistical machine learning methods are increasingly used for neuroimaging data analysis.
Their main virtue is their ability to model high-dimensional datasets, eg multivariate analysis …

A hitchhiker's guide to diffusion tensor imaging

JM Soares, P Marques, V Alves, N Sousa - Frontiers in neuroscience, 2013 - frontiersin.org
Diffusion Tensor Imaging (DTI) studies are increasingly popular among clinicians and
researchers as they provide unique insights into brain network connectivity. However, in …

A Hitchhiker's guide to functional magnetic resonance imaging

JM Soares, R Magalhães, PS Moreira… - Frontiers in …, 2016 - frontiersin.org
Functional Magnetic Resonance Imaging (fMRI) studies have become increasingly popular
both with clinicians and researchers as they are capable of providing unique insights into …

PyMVPA: A python toolbox for multivariate pattern analysis of fMRI data

M Hanke, YO Halchenko, PB Sederberg, SJ Hanson… - Neuroinformatics, 2009 - Springer
Decoding patterns of neural activity onto cognitive states is one of the central goals of
functional brain imaging. Standard univariate fMRI analysis methods, which correlate …

Endogenous variation in ventromedial prefrontal cortex state dynamics during naturalistic viewing reflects affective experience

LJ Chang, E Jolly, JH Cheong, KM Rapuano… - Science …, 2021 - science.org
How we process ongoing experiences is shaped by our personal history, current needs, and
future goals. Consequently, ventromedial prefrontal cortex (vmPFC) activity involved in …

Pycortex: an interactive surface visualizer for fMRI

JS Gao, AG Huth, MD Lescroart… - Frontiers in …, 2015 - frontiersin.org
Surface visualizations of fMRI provide a comprehensive view of cortical activity. However,
surface visualizations are difficult to generate and most common visualization techniques …

Abnormal thalamocortical structural and functional connectivity in juvenile myoclonic epilepsy

J O'Muircheartaigh, C Vollmar, GJ Barker, V Kumari… - Brain, 2012 - academic.oup.com
Juvenile myoclonic epilepsy is the most common idiopathic generalized epilepsy,
characterized by frequent myoclonic jerks, generalized tonic-clonic seizures and, less …