Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms

C Gasc, E Peyretaillade, P Peyret - Nucleic Acids Research, 2016 - academic.oup.com
The recent expansion of next-generation sequencing has significantly improved biological
research. Nevertheless, deep exploration of genomes or metagenomic samples remains …

DNA microarray technology and bioinformatic web services

P Behzadi, R Ranjbar - Acta microbiologica et immunologica …, 2019 - akjournals.com
The pan-genomic microarray technique is used for environmental and/or clinical studies.
Although microarray is an accurate and sharp diagnostic tool, the expertized …

Accessing the soil metagenome for studies of microbial diversity

TO Delmont, P Robe, S Cecillon, IM Clark… - Applied and …, 2011 - Am Soc Microbiol
Soil microbial communities contain the highest level of prokaryotic diversity of any
environment, and metagenomic approaches involving the extraction of DNA from soil can …

Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling

SM Zimmerman, R Fropf, BR Kulasekara… - Genome …, 2022 - genome.cshlp.org
Emerging spatial profiling technology has enabled high-plex molecular profiling in biological
tissues, preserving the spatial and morphological context of gene expression. Here, we …

[图书][B] Environmental microbiology: fundamentals and applications

JC Bertrand, P Caumette, P Lebaron, R Matheron… - 2015 - Springer
The average citizen thinks of microbes as dangerous or at least as nasty enemies to her/his
health that she/he cannot see. The invisibility to the naked eye is the reason why microbes …

The human gut chip “HuGChip”, an explorative phylogenetic microarray for determining gut microbiome diversity at family level

W Tottey, J Denonfoux, F Jaziri, N Parisot, M Missaoui… - PloS one, 2013 - journals.plos.org
Evaluating the composition of the human gut microbiota greatly facilitates studies on its role
in human pathophysiology, and is heavily reliant on culture-independent molecular …

Molecular tools in rhizosphere microbiology—from single-cell to whole-community analysis

J Sørensen, M Haubjerg Nicolaisen, E Ron, P Simonet - 2009 - Springer
It is the aim of this chapter to present an overview of new, molecular tools that have been
developed over recent years to study individual, single cells and composite, complex …

Hybridization capture reveals microbial diversity missed using current profiling methods

C Gasc, P Peyret - Microbiome, 2018 - Springer
Background Microorganisms comprise the majority of living organisms on our planet. For
many years, exploration of the composition of microbial communities has been performed …

Detecting unknown sequences with DNA microarrays: explorative probe design strategies

E Dugat‐Bony, E Peyretaillade… - Environmental …, 2012 - Wiley Online Library
Designing environmental DNA microarrays that can be used to survey the extreme diversity
of microorganisms existing in nature, represents a stimulating challenge in the field of …

Gene capture coupled to high-throughput sequencing as a strategy for targeted metagenome exploration

J Denonfoux, N Parisot, E Dugat-Bony… - DNA …, 2013 - academic.oup.com
Next-generation sequencing (NGS) allows faster acquisition of metagenomic data, but
complete exploration of complex ecosystems is hindered by the extraordinary diversity of …