Serpins in tick physiology and tick-host interaction

MN Abbas, A Chlastáková, MA Jmel… - Frontiers in Cellular …, 2022 - frontiersin.org
Tick saliva has been extensively studied in the context of tick-host interactions because it is
involved in host homeostasis modulation and microbial pathogen transmission to the host …

Extracellular Matrix Proteomics: The mdx-4cv Mouse Diaphragm as a Surrogate for Studying Myofibrosis in Dystrophinopathy

P Dowling, S Gargan, M Zweyer, D Swandulla… - Biomolecules, 2023 - mdpi.com
The progressive degeneration of the skeletal musculature in Duchenne muscular dystrophy
is accompanied by reactive myofibrosis, fat substitution, and chronic inflammation. Fibrotic …

[HTML][HTML] Evolutionary velocity with protein language models predicts evolutionary dynamics of diverse proteins

BL Hie, KK Yang, PS Kim - Cell Systems, 2022 - cell.com
The degree to which evolution is predictable is a fundamental question in biology. Previous
attempts to predict the evolution of protein sequences have been limited to specific proteins …

Origin and functional diversification of PAS domain, a ubiquitous intracellular sensor

J Xing, VM Gumerov, IB Zhulin - Science Advances, 2023 - science.org
Signal perception is a key function in regulating biological activities and adapting to
changing environments. Per-Arnt-Sim (PAS) domains are ubiquitous sensors found in …

Comprehensive phylogenetic analysis of the ribonucleotide reductase family reveals an ancestral clade

AA Burnim, MA Spence, D Xu, CJ Jackson, N Ando - Elife, 2022 - elifesciences.org
Ribonucleotide reductases (RNRs) are used by all free-living organisms and many viruses
to catalyze an essential step in the de novo biosynthesis of DNA precursors. RNRs are …

N-glycosylation as a eukaryotic protective mechanism against protein aggregation

R Duran-Romaña, B Houben, M De Vleeschouwer… - Science …, 2024 - science.org
The tendency for proteins to form aggregates is an inherent part of every proteome and
arises from the self-assembly of short protein segments called aggregation-prone regions …

Binding and sequestration of poison frog alkaloids by a plasma globulin

A Alvarez-Buylla, MT Fischer, MDM Garzon, AE Rangel… - Elife, 2023 - elifesciences.org
Alkaloids are important bioactive molecules throughout the natural world, and in many
animals they serve as a source of chemical defense against predation. Dendrobatid poison …

[HTML][HTML] SERPINA3C ameliorates adipose tissue inflammation through the Cathepsin G/Integrin/AKT pathway

BY Li, YY Guo, G Xiao, L Guo, QQ Tang - Molecular Metabolism, 2022 - Elsevier
Objective Due to the increasing prevalence of obesity and insulin resistance, there is an
urgent need for better treatment of obesity and its related metabolic disorders. This study …

Iripin-1, a new anti-inflammatory tick serpin, inhibits leukocyte recruitment in vivo while altering the levels of chemokines and adhesion molecules

A Chlastáková, B Kaščáková, J Kotál… - Frontiers in …, 2023 - frontiersin.org
Serpins are widely distributed and functionally diverse inhibitors of serine proteases. Ticks
secrete serpins with anti-coagulation, anti-inflammatory, and immunomodulatory activities …

Highly significant improvement of protein sequence alignments with AlphaFold2

A Baltzis, L Mansouri, S Jin, BE Langer, I Erb… - …, 2022 - academic.oup.com
Motivation Protein sequence alignments are essential to structural, evolutionary and
functional analysis, but their accuracy is often limited by sequence similarity unless …