Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry*[S]

F Müller, L Kolbowski, OM Bernhardt, L Reiter… - Molecular & Cellular …, 2019 - ASBMB
Quantitative cross-linking mass spectrometry (QCLMS) reveals structural detail on altered
protein states in solution. On its way to becoming a routine technology, QCLMS could benefit …

Sequential digestion with trypsin and elastase in cross-linking mass spectrometry

T Dau, K Gupta, I Berger, J Rappsilber - Analytical chemistry, 2019 - ACS Publications
Cross-linking mass spectrometry has become an important approach for studying protein
structures and protein–protein interactions. The amino acid compositions of some protein …

Quantitative photo-crosslinking mass spectrometry revealing protein structure response to environmental changes

F Müller, A Graziadei, J Rappsilber - Analytical chemistry, 2019 - ACS Publications
Protein structures respond to changes in their chemical and physical environment. However,
studying such conformational changes is notoriously difficult, as many structural biology …

The CroCo cross-link converter: a user-centred tool to convert results from cross-linking mass spectrometry experiments

J Bender, C Schmidt - Bioinformatics, 2020 - academic.oup.com
Motivation A variety of search engines exists for the identification of peptide spectrum
matches after cross-linking mass spectrometry experiments. The resulting diversity in output …