New insights into genome folding by loop extrusion from inducible degron technologies

E de Wit, EP Nora - Nature Reviews Genetics, 2023 - nature.com
Chromatin folds into dynamic loops that often span hundreds of kilobases and physically
wire distant loci together for gene regulation. These loops are continuously created …

CTCF shapes chromatin structure and gene expression in health and disease

B Dehingia, M Milewska, M Janowski, A Pękowska - EMBO reports, 2022 - embopress.org
CCCTC‐binding factor (CTCF) is an eleven zinc finger (ZF), multivalent transcriptional
regulator, that recognizes numerous motifs thanks to the deployment of distinct combinations …

CTCF is a DNA-tension-dependent barrier to cohesin-mediated loop extrusion

IF Davidson, R Barth, M Zaczek, J van der Torre… - Nature, 2023 - nature.com
In eukaryotes, genomic DNA is extruded into loops by cohesin. By restraining this process,
the DNA-binding protein CCCTC-binding factor (CTCF) generates topologically associating …

Nucleolar-based Dux repression is essential for embryonic two-cell stage exit

SQ Xie, BJ Leeke, C Whilding, RT Wagner… - Genes & …, 2022 - genesdev.cshlp.org
Upon fertilization, the mammalian embryo must switch from dependence on maternal
transcripts to transcribing its own genome, and in mice this involves the transient up …

The maternal-to-zygotic transition: reprogramming of the cytoplasm and nucleus

ML Kojima, C Hoppe, AJ Giraldez - Nature Reviews Genetics, 2024 - nature.com
A fertilized egg is initially transcriptionally silent and relies on maternally provided factors to
initiate development. For embryonic development to proceed, the oocyte-inherited …

Characterization and perturbation of CTCF-mediated chromatin interactions for enhancing myogenic transdifferentiation

R Ren, Y Fan, Z Peng, S Wang, Y Jiang, L Fu, J Cao… - Cell Reports, 2022 - cell.com
Expression of key transcription factors can induce transdifferentiation in somatic cells;
however, this conversion is usually incomplete due to undefined intrinsic barriers. Here, we …

The PTM profiling of CTCF reveals the regulation of 3D chromatin structure by O-GlcNAcylation

X Tang, P Zeng, K Liu, L Qing, Y Sun, X Liu… - Nature …, 2024 - nature.com
Abstract CCCTC-binding factor (CTCF), a ubiquitously expressed and highly conserved
protein, is known to play a critical role in chromatin structure. Post-translational modifications …

The homeobox transcription factor DUXBL controls exit from totipotency

M Vega-Sendino, FF Lüttmann, T Olbrich, Y Chen… - Nature …, 2024 - nature.com
In mice, exit from the totipotent two-cell (2C) stage embryo requires silencing of the 2C-
associated transcriptional program. However, the molecular mechanisms involved in this …

Enhancer cooperativity can compensate for loss of activity over large genomic distances

HF Thomas, S Feng, F Haslhofer, M Huber… - Molecular Cell, 2024 - cell.com
Enhancers are short DNA sequences that activate their target promoter from a distance;
however, increasing the genomic distance between the enhancer and the promoter …

Preimplantation embryo gene expression: 56 years of discovery, and counting

KE Latham - Molecular reproduction and development, 2023 - Wiley Online Library
The biology of preimplantation embryo gene expression began 56 years ago with studies of
the effects of protein synthesis inhibition and discovery of changes in embryo metabolism …