New insights into genome folding by loop extrusion from inducible degron technologies
Chromatin folds into dynamic loops that often span hundreds of kilobases and physically
wire distant loci together for gene regulation. These loops are continuously created …
wire distant loci together for gene regulation. These loops are continuously created …
CTCF shapes chromatin structure and gene expression in health and disease
B Dehingia, M Milewska, M Janowski, A Pękowska - EMBO reports, 2022 - embopress.org
CCCTC‐binding factor (CTCF) is an eleven zinc finger (ZF), multivalent transcriptional
regulator, that recognizes numerous motifs thanks to the deployment of distinct combinations …
regulator, that recognizes numerous motifs thanks to the deployment of distinct combinations …
CTCF is a DNA-tension-dependent barrier to cohesin-mediated loop extrusion
In eukaryotes, genomic DNA is extruded into loops by cohesin. By restraining this process,
the DNA-binding protein CCCTC-binding factor (CTCF) generates topologically associating …
the DNA-binding protein CCCTC-binding factor (CTCF) generates topologically associating …
Nucleolar-based Dux repression is essential for embryonic two-cell stage exit
SQ Xie, BJ Leeke, C Whilding, RT Wagner… - Genes & …, 2022 - genesdev.cshlp.org
Upon fertilization, the mammalian embryo must switch from dependence on maternal
transcripts to transcribing its own genome, and in mice this involves the transient up …
transcripts to transcribing its own genome, and in mice this involves the transient up …
The maternal-to-zygotic transition: reprogramming of the cytoplasm and nucleus
ML Kojima, C Hoppe, AJ Giraldez - Nature Reviews Genetics, 2024 - nature.com
A fertilized egg is initially transcriptionally silent and relies on maternally provided factors to
initiate development. For embryonic development to proceed, the oocyte-inherited …
initiate development. For embryonic development to proceed, the oocyte-inherited …
Characterization and perturbation of CTCF-mediated chromatin interactions for enhancing myogenic transdifferentiation
R Ren, Y Fan, Z Peng, S Wang, Y Jiang, L Fu, J Cao… - Cell Reports, 2022 - cell.com
Expression of key transcription factors can induce transdifferentiation in somatic cells;
however, this conversion is usually incomplete due to undefined intrinsic barriers. Here, we …
however, this conversion is usually incomplete due to undefined intrinsic barriers. Here, we …
The PTM profiling of CTCF reveals the regulation of 3D chromatin structure by O-GlcNAcylation
Abstract CCCTC-binding factor (CTCF), a ubiquitously expressed and highly conserved
protein, is known to play a critical role in chromatin structure. Post-translational modifications …
protein, is known to play a critical role in chromatin structure. Post-translational modifications …
The homeobox transcription factor DUXBL controls exit from totipotency
M Vega-Sendino, FF Lüttmann, T Olbrich, Y Chen… - Nature …, 2024 - nature.com
In mice, exit from the totipotent two-cell (2C) stage embryo requires silencing of the 2C-
associated transcriptional program. However, the molecular mechanisms involved in this …
associated transcriptional program. However, the molecular mechanisms involved in this …
Enhancer cooperativity can compensate for loss of activity over large genomic distances
Enhancers are short DNA sequences that activate their target promoter from a distance;
however, increasing the genomic distance between the enhancer and the promoter …
however, increasing the genomic distance between the enhancer and the promoter …
Preimplantation embryo gene expression: 56 years of discovery, and counting
KE Latham - Molecular reproduction and development, 2023 - Wiley Online Library
The biology of preimplantation embryo gene expression began 56 years ago with studies of
the effects of protein synthesis inhibition and discovery of changes in embryo metabolism …
the effects of protein synthesis inhibition and discovery of changes in embryo metabolism …