Clinical metagenomics

CY Chiu, SA Miller - Nature Reviews Genetics, 2019 - nature.com
Clinical metagenomic next-generation sequencing (mNGS), the comprehensive analysis of
microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly …

Human immune diversity: from evolution to modernity

A Liston, S Humblet-Baron, D Duffy, A Goris - Nature immunology, 2021 - nature.com
The extreme diversity of the human immune system, forged and maintained throughout
evolutionary history, provides a potent defense against opportunistic pathogens. At the same …

The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination

F Wimmers, M Donato, A Kuo, T Ashuach, S Gupta… - Cell, 2021 - cell.com
Emerging evidence indicates a fundamental role for the epigenome in immunity. Here, we
mapped the epigenomic and transcriptional landscape of immunity to influenza vaccination …

Pan-vaccine analysis reveals innate immune endotypes predictive of antibody responses to vaccination

S Fourati, LE Tomalin, MP Mulè, DG Chawla… - Nature …, 2022 - nature.com
Several studies have shown that the pre-vaccination immune state is associated with the
antibody response to vaccination. However, the generalizability and mechanisms that …

ImmPort, toward repurposing of open access immunological assay data for translational and clinical research

S Bhattacharya, P Dunn, CG Thomas, B Smith… - Scientific data, 2018 - nature.com
Immunology researchers are beginning to explore the possibilities of reproducibility, reuse
and secondary analyses of immunology data. Open-access datasets are being applied in …

Mechanisms underlying T cell ageing

JJ Goronzy, CM Weyand - Nature Reviews Immunology, 2019 - nature.com
T cell ageing has a pivotal role in rendering older individuals vulnerable to infections and
cancer and in impairing the response to vaccination. Easy accessibility to peripheral human …

The science and medicine of human immunology

B Pulendran, MM Davis - Science, 2020 - science.org
BACKGROUND The mammalian immune system is a remarkable sensory system for the
detection and neutralization of pathogens. History is replete with the devastating effects of …

Broad immune activation underlies shared set point signatures for vaccine responsiveness in healthy individuals and disease activity in patients with lupus

Y Kotliarov, R Sparks, AJ Martins, MP Mulè, Y Lu… - Nature medicine, 2020 - nature.com
Responses to vaccination and to diseases vary widely across individuals, which may be
partly due to baseline immune variations. Identifying such baseline predictors of immune …

Immune history and influenza vaccine effectiveness

JA Lewnard, S Cobey - Vaccines, 2018 - mdpi.com
The imperfect effectiveness of seasonal influenza vaccines is often blamed on antigenic
mismatch, but even when the match appears good, effectiveness can be surprisingly low …

[HTML][HTML] Improving vaccine-induced immunity: can baseline predict outcome?

JS Tsang, C Dobaño, P VanDamme, G Moncunill… - Trends in …, 2020 - cell.com
Immune signatures measured at baseline and immediately prior to vaccination may predict
the immune response to vaccination. Such pre-vaccine assessment might allow not only …