Making sense of cancer genomic data

L Chin, WC Hahn, G Getz, M Meyerson - Genes & development, 2011 - genesdev.cshlp.org
High-throughput tools for nucleic acid characterization now provide the means to conduct
comprehensive analyses of all somatic alterations in the cancer genomes. Both large-scale …

Clonal status of actionable driver events and the timing of mutational processes in cancer evolution

N McGranahan, F Favero, EC De Bruin… - Science translational …, 2015 - science.org
Deciphering whether actionable driver mutations are found in all or a subset of tumor cells
will likely be required to improve drug development and precision medicine strategies. We …

Mutational landscape of EGFR-, MYC-, and Kras-driven genetically engineered mouse models of lung adenocarcinoma

DG McFadden, K Politi, A Bhutkar… - Proceedings of the …, 2016 - National Acad Sciences
Genetically engineered mouse models (GEMMs) of cancer are increasingly being used to
assess putative driver mutations identified by large-scale sequencing of human cancer …

Genomic instability in breast and ovarian cancers: translation into clinical predictive biomarkers

MA Vollebergh, J Jonkers, SC Linn - Cellular and molecular life sciences, 2012 - Springer
Breast and ovarian cancer are among the most common malignancies diagnosed in women
worldwide. Together, they account for the majority of cancer-related deaths in women. These …

Targeted expression of mutated ALK induces neuroblastoma in transgenic mice

LC Heukamp, T Thor, A Schramm, K De Preter… - Science translational …, 2012 - science.org
Activating anaplastic lymphoma kinase (ALK) mutations were recently detected in most
familial and 10% of sporadic neuroblastomas. However, the role of mutated ALK in …

Recurrent ESR1CCDC170 rearrangements in an aggressive subset of oestrogen receptor-positive breast cancers

J Veeraraghavan, Y Tan, XX Cao, JA Kim… - Nature …, 2014 - nature.com
Characterizing the genetic alterations leading to the more aggressive forms of oestrogen
receptor-positive (ER+) breast cancers is of critical significance in breast cancer …

LRP1B deletion in high-grade serous ovarian cancers is associated with acquired chemotherapy resistance to liposomal doxorubicin

PA Cowin, J George, S Fereday, E Loehrer, P Van Loo… - Cancer research, 2012 - AACR
High-grade serous cancer (HGSC), the most common subtype of ovarian cancer, often
becomes resistant to chemotherapy, leading to poor patient outcomes. Intratumoral …

The challenge of cancer genomics in rare nervous system neoplasms: malignant peripheral nerve sheath tumors as a paradigm for cross-species comparative …

SL Carroll - The American journal of pathology, 2016 - Elsevier
Comprehensive genomic analyses of common nervous system cancers provide new
insights into their pathogenesis, diagnosis, and treatment. Although analogous studies of …

The MutSβ complex is a modulator of p53-driven tumorigenesis through its functions in both DNA double-strand break repair and mismatch repair

JMM van Oers, Y Edwards, R Chahwan, W Zhang… - Oncogene, 2014 - nature.com
Loss of the DNA mismatch repair (MMR) protein MSH3 leads to the development of a variety
of tumors in mice without significantly affecting survival rates, suggesting a modulating role …

Genomic variants in mouse model induced by azoxymethane and dextran sodium sulfate improperly mimic human colorectal cancer

Q Pan, X Lou, J Zhang, Y Zhu, F Li, Q Shan, X Chen… - Scientific reports, 2017 - nature.com
Mouse model induced by azoxymethane (AOM) and dextran sodium sulfate (DSS) is
generally accepted as an ideal object to study on the carcinogenesis mechanisms of human …