Chromatin and transcription in yeast

OJ Rando, F Winston - Genetics, 2012 - academic.oup.com
Understanding the mechanisms by which chromatin structure controls eukaryotic
transcription has been an intense area of investigation for the past 25 years. Many of the key …

Disentangling the many layers of eukaryotic transcriptional regulation

KM Lelli, M Slattery, RS Mann - Annual review of genetics, 2012 - annualreviews.org
Regulation of gene expression in eukaryotes is an extremely complex process. In this
review, we break down several critical steps, emphasizing new data and techniques that …

Measuring DNA mechanics on the genome scale

A Basu, DG Bobrovnikov, Z Qureshi, T Kayikcioglu… - Nature, 2021 - nature.com
Mechanical deformations of DNA such as bending are ubiquitous and have been implicated
in diverse cellular functions. However, the lack of high-throughput tools to measure the …

Nucleosomes inhibit target cleavage by CRISPR-Cas9 in vivo

RM Yarrington, S Verma, S Schwartz… - Proceedings of the …, 2018 - National Acad Sciences
Genome editing with CRISPR-Cas nucleases has been applied successfully to a wide range
of cells and organisms. There is, however, considerable variation in the efficiency of …

Quantitative imaging of transcription in living Drosophila embryos links polymerase activity to patterning

HG Garcia, M Tikhonov, A Lin, T Gregor - Current biology, 2013 - cell.com
Spatiotemporal patterns of gene expression are fundamental to every developmental
program. The resulting macroscopic domains have been mainly characterized by their levels …

Epigenome characterization at single base-pair resolution

JG Henikoff, JA Belsky, K Krassovsky… - Proceedings of the …, 2011 - National Acad Sciences
We have combined standard micrococcal nuclease (MNase) digestion of nuclei with a
modified protocol for constructing paired-end DNA sequencing libraries to map both …

Nitric oxide-releasing chitosan nanoparticles alleviate the effects of salt stress in maize plants

HC Oliveira, BCR Gomes, MT Pelegrino, AB Seabra - Nitric Oxide, 2016 - Elsevier
Nitric oxide (NO) is a signaling molecule involved in plant response to various abiotic
stresses. However, the application of NO donors in agriculture is hampered by the instability …

Intrinsic coupling of lagging-strand synthesis to chromatin assembly

DJ Smith, I Whitehouse - Nature, 2012 - nature.com
Fifty per cent of the genome is discontinuously replicated on the lagging strand as Okazaki
fragments. Eukaryotic Okazaki fragments remain poorly characterized and, because …

Systematic study of nucleosome-displacing factors in budding yeast

C Yan, H Chen, L Bai - Molecular cell, 2018 - cell.com
Nucleosomes present a barrier for the binding of most transcription factors (TFs). However,
special TFs known as nucleosome-displacing factors (NDFs) can access embedded sites …

Epigenetic control of immunity

M Busslinger, A Tarakhovsky - Cold Spring Harbor …, 2014 - cshperspectives.cshlp.org
Immunity relies on the heterogeneity of immune cells and their ability to respond to pathogen
challenges. In the adaptive immune system, lymphocytes display a highly diverse antigen …