Disentangling the many layers of eukaryotic transcriptional regulation
KM Lelli, M Slattery, RS Mann - Annual review of genetics, 2012 - annualreviews.org
Regulation of gene expression in eukaryotes is an extremely complex process. In this
review, we break down several critical steps, emphasizing new data and techniques that …
review, we break down several critical steps, emphasizing new data and techniques that …
Measuring DNA mechanics on the genome scale
Mechanical deformations of DNA such as bending are ubiquitous and have been implicated
in diverse cellular functions. However, the lack of high-throughput tools to measure the …
in diverse cellular functions. However, the lack of high-throughput tools to measure the …
Nucleosomes inhibit target cleavage by CRISPR-Cas9 in vivo
RM Yarrington, S Verma, S Schwartz… - Proceedings of the …, 2018 - National Acad Sciences
Genome editing with CRISPR-Cas nucleases has been applied successfully to a wide range
of cells and organisms. There is, however, considerable variation in the efficiency of …
of cells and organisms. There is, however, considerable variation in the efficiency of …
Quantitative imaging of transcription in living Drosophila embryos links polymerase activity to patterning
Spatiotemporal patterns of gene expression are fundamental to every developmental
program. The resulting macroscopic domains have been mainly characterized by their levels …
program. The resulting macroscopic domains have been mainly characterized by their levels …
Epigenome characterization at single base-pair resolution
JG Henikoff, JA Belsky, K Krassovsky… - Proceedings of the …, 2011 - National Acad Sciences
We have combined standard micrococcal nuclease (MNase) digestion of nuclei with a
modified protocol for constructing paired-end DNA sequencing libraries to map both …
modified protocol for constructing paired-end DNA sequencing libraries to map both …
Nitric oxide-releasing chitosan nanoparticles alleviate the effects of salt stress in maize plants
Nitric oxide (NO) is a signaling molecule involved in plant response to various abiotic
stresses. However, the application of NO donors in agriculture is hampered by the instability …
stresses. However, the application of NO donors in agriculture is hampered by the instability …
Intrinsic coupling of lagging-strand synthesis to chromatin assembly
DJ Smith, I Whitehouse - Nature, 2012 - nature.com
Fifty per cent of the genome is discontinuously replicated on the lagging strand as Okazaki
fragments. Eukaryotic Okazaki fragments remain poorly characterized and, because …
fragments. Eukaryotic Okazaki fragments remain poorly characterized and, because …
Systematic study of nucleosome-displacing factors in budding yeast
Nucleosomes present a barrier for the binding of most transcription factors (TFs). However,
special TFs known as nucleosome-displacing factors (NDFs) can access embedded sites …
special TFs known as nucleosome-displacing factors (NDFs) can access embedded sites …
Epigenetic control of immunity
M Busslinger, A Tarakhovsky - Cold Spring Harbor …, 2014 - cshperspectives.cshlp.org
Immunity relies on the heterogeneity of immune cells and their ability to respond to pathogen
challenges. In the adaptive immune system, lymphocytes display a highly diverse antigen …
challenges. In the adaptive immune system, lymphocytes display a highly diverse antigen …