Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes

A Sveen, S Kilpinen, A Ruusulehto, RA Lothe… - Oncogene, 2016 - nature.com
Alternative splicing is a widespread process contributing to structural transcript variation and
proteome diversity. In cancer, the splicing process is commonly disrupted, resulting in both …

Principles and methods of integrative genomic analyses in cancer

VN Kristensen, OC Lingjærde, HG Russnes… - Nature Reviews …, 2014 - nature.com
Combined analyses of molecular data, such as DNA copy-number alteration, mRNA and
protein expression, point to biological functions and molecular pathways being deregulated …

Contribution of intimal smooth muscle cells to cholesterol accumulation and macrophage-like cells in human atherosclerosis

S Allahverdian, AC Chehroudi, BM McManus… - Circulation, 2014 - Am Heart Assoc
Background—Intimal smooth muscle cells (SMCs) contribute to the foam cell population in
arterial plaque, and express lower levels of the cholesterol exporter ATP-binding cassette …

Vimentin regulates EMT induction by Slug and oncogenic H-Ras and migration by governing Axl expression in breast cancer

K Vuoriluoto, H Haugen, S Kiviluoto, JP Mpindi, J Nevo… - Oncogene, 2011 - nature.com
Epithelial-to-mesenchymal transition (EMT) is a critical event in the progression toward
cancer metastasis. The intermediate filament protein vimentin is an important marker of EMT …

Novel theranostic opportunities offered by characterization of altered membrane lipid metabolism in breast cancer progression

M Hilvo, C Denkert, L Lehtinen, B Müller, S Brockmöller… - Cancer research, 2011 - AACR
Activation of lipid metabolism is an early event in carcinogenesis and a central hallmark of
many cancers. However, the precise molecular composition of lipids in tumors remains …

A comprehensive panel of three-dimensional models for studies of prostate cancer growth, invasion and drug responses

V Härmä, J Virtanen, R Mäkelä, A Happonen… - PloS one, 2010 - journals.plos.org
Prostate epithelial cells from both normal and cancer tissues, grown in three-dimensional
(3D) culture as spheroids, represent promising in vitro models for the study of normal and …

Identification of fusion genes in breast cancer by paired-end RNA-sequencing

H Edgren, A Murumagi, S Kangaspeska, D Nicorici… - Genome biology, 2011 - Springer
Background Until recently, chromosomal translocations and fusion genes have been an
underappreciated class of mutations in solid tumors. Next-generation sequencing …

Epac: defining a new mechanism for cAMP action

M Gloerich, JL Bos - Annual review of pharmacology and …, 2010 - annualreviews.org
cAMP is a second messenger that is essential for relaying hormonal responses in many
biological processes. The discovery of the cAMP target Epac explained various effects of …

A global map of human gene expression

M Lukk, M Kapushesky, J Nikkilä, H Parkinson… - Nature …, 2010 - nature.com
Figure 1 Principal component analysis. Each dot represents one of the 5,372 samples in a
multidimensional gene expression space projected on the principal plane formed by the first …

[HTML][HTML] A dual role for the anti-apoptotic Bcl-2 protein in cancer: mitochondria versus endoplasmic reticulum

H Akl, T Vervloessem, S Kiviluoto, M Bittremieux… - Biochimica et biophysica …, 2014 - Elsevier
Anti-apoptotic Bcl-2 contributes to cancer formation and progression by promoting the
survival of altered cells. Hence, it is a prime target for novel specific anti-cancer therapeutics …