Generating specificity in genome regulation through transcription factor sensitivity to chromatin

L Isbel, RS Grand, D Schübeler - Nature Reviews Genetics, 2022 - nature.com
Cell type-specific gene expression relies on transcription factors (TFs) binding DNA
sequence motifs embedded in chromatin. Understanding how motifs are accessed in …

Energy-driven genome regulation by ATP-dependent chromatin remodellers

S Eustermann, AB Patel, KP Hopfner, Y He… - … Reviews Molecular Cell …, 2024 - nature.com
The packaging of DNA into chromatin in eukaryotes regulates gene transcription, DNA
replication and DNA repair. ATP-dependent chromatin remodelling enzymes (re) arrange …

Structures of transcription preinitiation complex engaged with the+ 1 nucleosome

H Wang, S Schilbach, M Ninov, H Urlaub… - Nature Structural & …, 2023 - nature.com
The preinitiation complex (PIC) assembles on promoters of protein-coding genes to position
RNA polymerase II (Pol II) for transcription initiation. Previous structural studies revealed the …

Structure of SWI/SNF chromatin remodeller RSC bound to a nucleosome

FR Wagner, C Dienemann, H Wang, A Stützer… - Nature, 2020 - nature.com
Chromatin-remodelling complexes of the SWI/SNF family function in the formation of
nucleosome-depleted, transcriptionally active promoter regions (NDRs),. In the yeast …

Beads on a string—nucleosome array arrangements and folding of the chromatin fiber

S Baldi, P Korber, PB Becker - Nature structural & molecular biology, 2020 - nature.com
Understanding how the genome is structurally organized as chromatin is essential for
understanding its function. Here, we review recent developments that allowed the …

Spatiotemporal coordination of transcription preinitiation complex assembly in live cells

VQ Nguyen, A Ranjan, S Liu, X Tang, YH Ling… - Molecular cell, 2021 - cell.com
Transcription initiation by RNA polymerase II (RNA Pol II) requires preinitiation complex
(PIC) assembly at gene promoters. In the dynamic nucleus, where thousands of promoters …

Opposing chromatin remodelers control transcription initiation frequency and start site selection

S Kubik, MJ Bruzzone, D Challal, R Dreos… - Nature structural & …, 2019 - nature.com
Precise nucleosome organization at eukaryotic promoters is thought to be generated by
multiple chromatin remodeler (CR) enzymes and to affect transcription initiation. Using an …

RSC-associated subnucleosomes define MNase-sensitive promoters in yeast

S Brahma, S Henikoff - Molecular cell, 2019 - cell.com
The classic view of nucleosome organization at active promoters is that two well-positioned
nucleosomes flank a nucleosome-depleted region (NDR). However, this view has been …

Old cogs, new tricks: the evolution of gene expression in a chromatin context

PB Talbert, MP Meers, S Henikoff - Nature Reviews Genetics, 2019 - nature.com
Sophisticated gene-regulatory mechanisms probably evolved in prokaryotes billions of
years before the emergence of modern eukaryotes, which inherited the same basic …

Epigenome regulation by dynamic nucleosome unwrapping

S Brahma, S Henikoff - Trends in biochemical sciences, 2020 - cell.com
Gene regulation in eukaryotes requires the controlled access of sequence-specific
transcription factors (TFs) to their sites in a chromatin landscape dominated by …