SoySNP618K array: a high‐resolution single nucleotide polymorphism platform as a valuable genomic resource for soybean genetics and breeding

YF Li, YH Li, SS Su, JC Reif, ZM Qi… - Journal of Integrative …, 2022 - Wiley Online Library
Innovations in genomics have enabled the development of low‐cost, high‐resolution, single
nucleotide polymorphism (SNP) genotyping arrays that accelerate breeding progress and …

Assessment of linkage disequilibrium patterns between structural variants and single nucleotide polymorphisms in three commercial chicken populations

J Geibel, NP Praefke, S Weigend, H Simianer… - BMC genomics, 2022 - Springer
Background Structural variants (SV) are causative for some prominent phenotypic traits of
livestock as different comb types in chickens or color patterns in pigs. Their effects on …

Comparing methods to select candidates for re-genotyping to impute higher-density genotype data in a Japanese Black cattle population: A case study

S Ogawa, A Zoda, R Kagawa, R Obinata - Animals, 2023 - mdpi.com
Simple Summary The effectiveness of selecting individuals based on pedigree information
(MCA) and genomic information (MCG) as a reference population for genotype imputation …

Imputation of low‐density marker chip data in plant breeding: Evaluation of methods based on sugar beet

T Niehoff, T Pook, M Gholami… - The Plant Genome, 2022 - Wiley Online Library
Low‐density genotyping followed by imputation reduces genotyping costs while still
providing high‐density marker information. An increased marker density has the potential to …

The big challenge for livestock genomics is to make sequence data pay

M Johnsson - Peer Community Journal, 2023 - peercommunityjournal.org
This paper will argue that one of the biggest challenges for livestock genomics is to make
whole-genome sequencing and functional genomics applicable to breeding practice. It …

Integrated Approach to Precision Oncology

Oncology is shifting from the traditional one-size-fits-all cancer treatment model to a
multifaceted model that takes into account the complexity and heterogeneity of the disease …

Selection signatures for heat tolerance in Brazilian horse breeds

DA de Faria, T do Prado Paim, CA Dos Santos… - Molecular Genetics and …, 2022 - Springer
Since domestication, horse breeds have adapted to their environments and differentiated
from one another. This paper uses two methods to detect selection signatures in 23 horse …

[PDF][PDF] New phenotypes to breed resilient Piétrain pigs

W Gorssen, N Buys, S Janssens - 2024 - researchgate.net
Wat heb ik hier naar uitgekeken! Op 7 dagen na heeft het mij 7 jaar gekost om een echte
doctor te worden. Dat het uiteindelijk zo lang geduurd heeft, is niet omdat ik een luierik ben …

A broad overview of genotype imputation: Standard guidelines, approaches, and future investigations in genomic association studies

M Treccani, E Locatelli, C Patuzzo, G Malerba - Biocell, 2023 - iris.univr.it
The advent of genomic big data and the statistical need for reaching significant results have
led genome-wide association studies to be ravenous of a huge number of genetic markers …

Ancestral Paths: Redefining local genetic ancestry and its inference with application to Europeans

A Pearson - 2023 - repository.cam.ac.uk
Recently, two new approaches have transformed our understanding of human population
history. Firstly, the sequencing of ancient genomes which gives us a snapshot of past …