Application of text mining in the biomedical domain

WWM Fleuren, W Alkema - Methods, 2015 - Elsevier
In recent years the amount of experimental data that is produced in biomedical research and
the number of papers that are being published in this field have grown rapidly. In order to …

Recent progress in mass spectrometry proteomics for biomedical research

X Li, W Wang, J Chen - Science China Life Sciences, 2017 - Springer
Proteins are the key players in many cellular processes. Their composition, trafficking, and
interactions underlie the dynamic processes of life. Furthermore, diseases are frequently …

Urinary proteome profiling for stratifying patients with familial Parkinson's disease

S Virreira Winter, O Karayel, MT Strauss… - EMBO molecular …, 2021 - embopress.org
The prevalence of Parkinson's disease (PD) is increasing but the development of novel
treatment strategies and therapeutics altering the course of the disease would benefit from …

Identification of a three-biomarker panel in urine for early detection of pancreatic adenocarcinoma

TP Radon, NJ Massat, R Jones, W Alrawashdeh… - Clinical Cancer …, 2015 - AACR
Purpose: Noninvasive biomarkers for early detection of pancreatic ductal adenocarcinoma
(PDAC) are currently not available. Here, we aimed to identify a set of urine proteins able to …

Ultrafiltration and size exclusion chromatography combined with asymmetrical-flow field-flow fractionation for the isolation and characterisation of extracellular vesicles …

E Oeyen, K Van Mol, G Baggerman… - Journal of …, 2018 - Taylor & Francis
Extracellular vesicles (EVs) have a great potential in clinical applications. However, their
isolation from different bodily fluids and their characterisation are currently not optimal or …

Quantitative analysis of the intra-and inter-individual variability of the normal urinary proteome

N Nagaraj, M Mann - Journal of proteome research, 2011 - ACS Publications
Urine is a readily and noninvasively obtainable body fluid. Mass spectrometry (MS)-based
proteomics has shown that urine contains thousands of proteins. Urine is a potential source …

Current state of the art for enhancing urine biomarker discovery

M Harpole, J Davis, V Espina - Expert review of Proteomics, 2016 - Taylor & Francis
Introduction: Urine is a highly desirable biospecimen for biomarker analysis because it can
be collected recurrently by non-invasive techniques, in relatively large volumes. Urine …

Advancing urinary protein biomarker discovery by data-independent acquisition on a quadrupole-orbitrap mass spectrometer

J Muntel, Y Xuan, ST Berger, L Reiter… - Journal of proteome …, 2015 - ACS Publications
The promises of data-independent acquisition (DIA) strategies are a comprehensive and
reproducible digital qualitative and quantitative record of the proteins present in a sample …

Human urinary glycoproteomics; attachment site specific analysis of N-and O-linked glycosylations by CID and ECD

A Halim, J Nilsson, U Rüetschi, C Hesse… - Molecular & Cellular …, 2012 - ASBMB
Urine is a complex mixture of proteins and waste products and a challenging biological fluid
for biomarker discovery. Previous proteomic studies have identified more than 2800 urinary …

State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology-and disease-driven Human …

T Farrah, EW Deutsch, GS Omenn, Z Sun… - Journal of proteome …, 2014 - ACS Publications
The kidney, urine, and plasma proteomes are intimately related: proteins and metabolic
waste products are filtered from the plasma by the kidney and excreted via the urine, while …