[HTML][HTML] Enabling technology and core theory of synthetic biology

XE Zhang, C Liu, J Dai, Y Yuan, C Gao, Y Feng… - Science China Life …, 2023 - Springer
Synthetic biology provides a new paradigm for life science research (“build to learn”) and
opens the future journey of biotechnology (“build to use”). Here, we discuss advances of …

Handling missing values in healthcare data: A systematic review of deep learning-based imputation techniques

M Liu, S Li, H Yuan, MEH Ong, Y Ning, F Xie… - Artificial intelligence in …, 2023 - Elsevier
Objective The proper handling of missing values is critical to delivering reliable estimates
and decisions, especially in high-stakes fields such as clinical research. In response to the …

Self-training: A survey

MR Amini, V Feofanov, L Pauletto, L Hadjadj… - arXiv preprint arXiv …, 2022 - arxiv.org
Semi-supervised algorithms aim to learn prediction functions from a small set of labeled
observations and a large set of unlabeled observations. Because this framework is relevant …

[HTML][HTML] Transformer for gene expression modeling (T-GEM): an interpretable deep learning model for gene expression-based phenotype predictions

TH Zhang, MM Hasib, YC Chiu, ZF Han, YF Jin… - Cancers, 2022 - mdpi.com
Simple Summary Cancer is the second leading cause of death worldwide. Predicting
phenotype and understanding makers that define the phenotype are important tasks. We …

How well does gpt-4v (ision) adapt to distribution shifts? a preliminary investigation

Z Han, G Zhou, R He, J Wang, X Xie, T Wu… - arXiv preprint arXiv …, 2023 - arxiv.org
In machine learning, generalization against distribution shifts--where deployment conditions
diverge from the training scenarios--is crucial, particularly in fields like climate modeling …

[HTML][HTML] Nanomedicine ex machina: between model-informed development and artificial intelligence

M Villa Nova, TP Lin, S Shanehsazzadeh… - Frontiers in Digital …, 2022 - frontiersin.org
Today, a growing number of computational aids and simulations are shaping model-
informed drug development. Artificial intelligence, a family of self-learning algorithms, is only …

PERCEPTION predicts patient response and resistance to treatment using single-cell transcriptomics of their tumors

S Sinha, R Vegesna, S Mukherjee, AV Kammula… - Nature Cancer, 2024 - nature.com
Tailoring optimal treatment for individual cancer patients remains a significant challenge. To
address this issue, we developed PERCEPTION (PERsonalized Single-Cell Expression …

Cryptic mutations of PLC family members in brain disorders: recent discoveries and a deep-learning-based approach

KH Lim, S Yang, SH Kim, E Ko, M Kang, JY Joo - Brain, 2023 - academic.oup.com
Phospholipase C (PLC) is an essential isozyme involved in the phosphoinositide signalling
pathway, which maintains cellular homeostasis. Gain-and loss-of-function mutations in PLC …

Classifying High-Risk Patients for Persistent Opioid Use After Major Spine Surgery: A Machine-Learning Approach

S Simpson, W Zhong, S Mehdipour… - Anesthesia & …, 2024 - journals.lww.com
BACKGROUND: Persistent opioid use is a common occurrence after surgery and prolonged
exposure to opioids may result in escalation and dependence. The objective of this study …

Finding new analgesics: Computational pharmacology faces drug discovery challenges

A Barakat, G Munro, AM Heegaard - Biochemical pharmacology, 2024 - Elsevier
Despite the worldwide prevalence and huge burden of pain, pain is an undertreated
phenomenon. Currently used analgesics have several limitations regarding their efficacy …