Recent advancements in molecular marker-assisted selection and applications in plant breeding programmes

N Hasan, S Choudhary, N Naaz, N Sharma… - Journal of Genetic …, 2021 - Elsevier
Background DNA markers improved the productivity and accuracy of classical plant
breeding by means of marker-assisted selection (MAS). The enormous number of …

Plant secondary metabolites as defenses, regulators, and primary metabolites: the blurred functional trichotomy

M Erb, DJ Kliebenstein - Plant physiology, 2020 - academic.oup.com
Plant Secondary Metabolites as Defenses, Regulators, and Primary Metabolites: The Blurred
Functional Trichotomy | Plant Physiology | Oxford Academic Skip to Main Content Advertisement …

Crop phenomics and high-throughput phenotyping: past decades, current challenges, and future perspectives

W Yang, H Feng, X Zhang, J Zhang, JH Doonan… - Molecular plant, 2020 - cell.com
Since whole-genome sequencing of many crops has been achieved, crop functional
genomics studies have stepped into the big-data and high-throughput era. However …

A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation

Y Dorone, S Boeynaems, E Flores, B Jin, S Hateley… - Cell, 2021 - cell.com
Many organisms evolved strategies to survive desiccation. Plant seeds protect dehydrated
embryos from various stressors and can lay dormant for millennia. Hydration is the key …

DNA molecular markers in plant breeding: current status and recent advancements in genomic selection and genome editing

MA Nadeem, MA Nawaz, MQ Shahid… - Biotechnology & …, 2018 - Taylor & Francis
With the development of molecular marker technology in the 1980s, the fate of plant
breeding has changed. Different types of molecular markers have been developed and …

Iterative usage of fixed and random effect models for powerful and efficient genome-wide association studies

X Liu, M Huang, B Fan, ES Buckler, Z Zhang - PLoS genetics, 2016 - journals.plos.org
False positives in a Genome-Wide Association Study (GWAS) can be effectively controlled
by a fixed effect and random effect Mixed Linear Model (MLM) that incorporates population …

BLINK: a package for the next level of genome-wide association studies with both individuals and markers in the millions

M Huang, X Liu, Y Zhou, RM Summers, Z Zhang - Gigascience, 2019 - academic.oup.com
Big datasets, accumulated from biomedical and agronomic studies, provide the potential to
identify genes that control complex human diseases and agriculturally important traits …

Evolutionary genomics can improve prediction of species' responses to climate change

AM Waldvogel, B Feldmeyer, G Rolshausen… - Evolution …, 2020 - academic.oup.com
Global climate change (GCC) increasingly threatens biodiversity through the loss of species,
and the transformation of entire ecosystems. Many species are challenged by the pace of …

[HTML][HTML] Epigenomic diversity in a global collection of Arabidopsis thaliana accessions

T Kawakatsu, SC Huang, F Jupe, E Sasaki, RJ Schmitz… - Cell, 2016 - cell.com
The epigenome orchestrates genome accessibility, functionality, and three-dimensional
structure. Because epigenetic variation can impact transcription and thus phenotypes, it may …

1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana

C Alonso-Blanco, J Andrade, C Becker, F Bemm… - Cell, 2016 - cell.com
Arabidopsis thaliana serves as a model organism for the study of fundamental physiological,
cellular, and molecular processes. It has also greatly advanced our understanding of …