Selection signatures in livestock genome: A review of concepts, approaches and applications

KA Saravanan, M Panigrahi, H Kumar, B Bhushan… - Livestock Science, 2020 - Elsevier
Livestock populations have been consistently improving in terms of performance and
productivity by selective breeding over the centuries. These selection strategies are …

Genetics of the phenotypic evolution in sheep: a molecular look at diversity-driving genes

P Kalds, S Zhou, Y Gao, B Cai, S Huang… - Genetics Selection …, 2022 - Springer
Background After domestication, the evolution of phenotypically-varied sheep breeds has
generated rich biodiversity. This wide phenotypic variation arises as a result of hidden …

Grey wolf genomic history reveals a dual ancestry of dogs

A Bergström, DWG Stanton, UH Taron, L Frantz… - Nature, 2022 - nature.com
The grey wolf (Canis lupus) was the first species to give rise to a domestic population, and
they remained widespread throughout the last Ice Age when many other large mammal …

Ensembl 2019

F Cunningham, P Achuthan, W Akanni… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Ensembl project (https://www. ensembl. org) makes key genomic data sets
available to the entire scientific community without restrictions. Ensembl seeks to be a …

863 genomes reveal the origin and domestication of chicken

MS Wang, M Thakur, MS Peng, YU Jiang, LAF Frantz… - Cell research, 2020 - nature.com
Despite the substantial role that chickens have played in human societies across the world,
both the geographic and temporal origins of their domestication remain controversial. To …

Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits

X Li, JI Yang, M Shen, XL Xie, GJ Liu, YX Xu… - Nature …, 2020 - nature.com
Understanding the genetic changes underlying phenotypic variation in sheep (Ovis aries)
may facilitate our efforts towards further improvement. Here, we report the deep …

OptM: estimating the optimal number of migration edges on population trees using Treemix

RR Fitak - Biology Methods and Protocols, 2021 - academic.oup.com
The software Treemix has become extensively used to estimate the number of migration
events, or edges (m), on population trees from genome-wide allele frequency data …

[PDF][PDF] Whole-genome resequencing of worldwide wild and domestic sheep elucidates genetic diversity, introgression, and agronomically important loci

FH Lv, YH Cao, GJ Liu, LY Luo, R Lu… - Molecular biology …, 2022 - academic.oup.com
Domestic sheep and their wild relatives harbor substantial genetic variants that can form the
backbone of molecular breeding, but their genome landscapes remain understudied. Here …

Herded and hunted goat genomes from the dawn of domestication in the Zagros Mountains

KG Daly, V Mattiangeli, AJ Hare… - Proceedings of the …, 2021 - National Acad Sciences
The Aceramic Neolithic (∼ 9600 to 7000 cal BC) period in the Zagros Mountains, western
Iran, provides some of the earliest archaeological evidence of goat (Capra hircus) …

Population genomics of apricots unravels domestication history and adaptive events

A Groppi, S Liu, A Cornille, S Decroocq, QT Bui… - Nature …, 2021 - nature.com
Among crop fruit trees, the apricot (Prunus armeniaca) provides an excellent model to study
divergence and adaptation processes. Here, we obtain nearly 600 Armeniaca apricot …