The Allen Ancient DNA Resource (AADR) a curated compendium of ancient human genomes

S Mallick, A Micco, M Mah, H Ringbauer, I Lazaridis… - Scientific Data, 2024 - nature.com
More than two hundred papers have reported genome-wide data from ancient humans.
While the raw data for the vast majority are fully publicly available testifying to the …

On the limits of fitting complex models of population history to f-statistics

R Maier, P Flegontov, O Flegontova, U Işıldak… - Elife, 2023 - elifesciences.org
Our understanding of population history in deep time has been assisted by fitting admixture
graphs (AGs) to data: models that specify the ordering of population splits and mixtures …

[PDF][PDF] Evolutionary genetics and admixture in African populations

A Pfennig, LN Petersen, P Kachambwa… - Genome Biology and …, 2023 - academic.oup.com
As the ancestral homeland of our species, Africa contains elevated levels of genetic diversity
and substantial population structure. Importantly, African genomes are heterogeneous: They …

Whole-genome sequencing reveals a complex African population demographic history and signatures of local adaptation

S Fan, JP Spence, Y Feng, MEB Hansen, J Terhorst… - Cell, 2023 - cell.com
We conduct high coverage (> 30×) whole-genome sequencing of 180 individuals from 12
indigenous African populations. We identify millions of unreported variants, many predicted …

Deep-time phylogenetic inference by paleoproteomic analysis of dental enamel

AJ Taurozzi, PL Rüther, I Patramanis, C Koenig… - Nature …, 2024 - nature.com
In temperate and subtropical regions, ancient proteins are reported to survive up to about 2
million years, far beyond the known limits of ancient DNA preservation in the same areas …

A weakly structured stem for human origins in Africa

AP Ragsdale, TD Weaver, EG Atkinson, EG Hoal… - Nature, 2023 - nature.com
Despite broad agreement that Homo sapiens originated in Africa, considerable uncertainty
surrounds specific models of divergence and migration across the continent. Progress is …

Modeling of African population history using f-statistics is biased when applying all previously proposed SNP ascertainment schemes

P Flegontov, U Işıldak, R Maier, E Yüncü… - PloS …, 2023 - journals.plos.org
f-statistics have emerged as a first line of analysis for making inferences about demographic
history from genome-wide data. Not only are they guaranteed to allow robust tests of the fits …

On the limits of fitting complex models of population history to genetic data

R Maier, P Flegontov, O Flegontova, P Changmai… - BioRxiv, 2022 - biorxiv.org
Our understanding of human population history in deep time has been assisted by fitting
“admixture graphs” to data: models that specify the ordering of population splits and mixtures …

Birch tar production does not prove Neanderthal behavioral complexity

P Schmidt, M Blessing, M Rageot… - Proceedings of the …, 2019 - National Acad Sciences
Birch tar production by Neanderthals—used for hafting tools—has been interpreted as one
of the earliest manifestations of modern cultural behavior. This is because birch tar …

BaTwa populations from Zambia retain ancestry of past hunter-gatherer groups

G Breton, L Barham, G Mudenda, H Soodyall… - Nature …, 2024 - nature.com
Sub-equatorial Africa is today inhabited predominantly by Bantu-speaking groups of
Western African descent who brought agriculture to the Luangwa valley in eastern Zambia …