CRISPR in cancer biology and therapy

A Katti, BJ Diaz, CM Caragine, NE Sanjana… - Nature Reviews …, 2022 - nature.com
Over the past decade, CRISPR has become as much a verb as it is an acronym,
transforming biomedical research and providing entirely new approaches for dissecting all …

[HTML][HTML] Strategies to overcome the main challenges of the use of CRISPR/Cas9 as a replacement for cancer therapy

MF Rasul, BM Hussen, A Salihi, BS Ismael, PJ Jalal… - Molecular Cancer, 2022 - Springer
CRISPR/Cas9 (clustered regularly interspaced short palindromic repeats-associated protein
9) shows the opportunity to treat a diverse array of untreated various genetic and …

Human genetic diversity alters off-target outcomes of therapeutic gene editing

S Cancellieri, J Zeng, LY Lin, M Tognon, MA Nguyen… - Nature …, 2023 - nature.com
CRISPR gene editing holds great promise to modify DNA sequences in somatic cells to treat
disease. However, standard computational and biochemical methods to predict off-target …

Mutations introduced in susceptibility genes through CRISPR/Cas9 genome editing confer increased late blight resistance in potatoes

NP Kieu, M Lenman, ES Wang, BL Petersen… - Scientific Reports, 2021 - nature.com
The use of pathogen-resistant cultivars is expected to increase yield and decrease fungicide
use in agriculture. However, in potato breeding, increased resistance obtained via …

DeepCRISPR: optimized CRISPR guide RNA design by deep learning

G Chuai, H Ma, J Yan, M Chen, N Hong, D Xue, C Zhou… - Genome biology, 2018 - Springer
A major challenge for effective application of CRISPR systems is to accurately predict the
single guide RNA (sgRNA) on-target knockout efficacy and off-target profile, which would …

CRISPR/Cpf1-mediated DNA-free plant genome editing

H Kim, ST Kim, J Ryu, BC Kang, JS Kim… - Nature …, 2017 - nature.com
Cpf1, a type V CRISPR effector, recognizes a thymidine-rich protospacer-adjacent motif and
induces cohesive double-stranded breaks at the target site guided by a single CRISPR RNA …

Computational tools and resources for CRISPR/Cas genome editing

C Li, W Chu, RA Gill, S Sang, Y Shi, X Hu… - Genomics …, 2023 - academic.oup.com
The past decade has witnessed a rapid evolution in identifying more versatile clustered
regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein (Cas) …

[HTML][HTML] Reduced enzymatic browning in potato tubers by specific editing of a polyphenol oxidase gene via ribonucleoprotein complexes delivery of the CRISPR/Cas9 …

MN González, GA Massa, M Andersson… - Frontiers in Plant …, 2020 - frontiersin.org
Polyphenol Oxidases (PPOs) catalyze the conversion of phenolic substrates to quinones,
leading to the formation of dark-colored precipitates in fruits and vegetables. This process …

[HTML][HTML] Construct design for CRISPR/Cas-based genome editing in plants

MM Hassan, Y Zhang, G Yuan, K De, JG Chen… - Trends in Plant …, 2021 - cell.com
CRISPR construct design is a key step in the practice of genome editing, which includes
identification of appropriate Cas proteins, design and selection of guide RNAs (gRNAs), and …

Design and analysis of CRISPR–Cas experiments

RE Hanna, JG Doench - Nature biotechnology, 2020 - nature.com
A large and ever-expanding set of CRISPR–Cas systems now enables the rapid and flexible
manipulation of genomes in both targeted and large-scale experiments. Numerous software …