[HTML][HTML] Tools for sequence-based miRNA target prediction: what to choose?
ÁL Riffo-Campos, I Riquelme… - International journal of …, 2016 - mdpi.com
MicroRNAs (miRNAs) are defined as small non-coding RNAs~ 22 nt in length. They regulate
gene expression at a post-transcriptional level through complementary base pairing with the …
gene expression at a post-transcriptional level through complementary base pairing with the …
[HTML][HTML] lincRNAs: genomics, evolution, and mechanisms
Long intervening noncoding RNAs (lincRNAs) are transcribed from thousands of loci in
mammalian genomes and might play widespread roles in gene regulation and other cellular …
mammalian genomes and might play widespread roles in gene regulation and other cellular …
[HTML][HTML] Global mapping of small RNA-target interactions in bacteria
Small RNAs (sRNAs) associated with the RNA chaperon protein Hfq are key
posttranscriptional regulators of gene expression in bacteria. Deciphering the sRNA-target …
posttranscriptional regulators of gene expression in bacteria. Deciphering the sRNA-target …
Small RNAs in bacteria and archaea: who they are, what they do, and how they do it
EGH Wagner, P Romby - Advances in genetics, 2015 - Elsevier
Small RNAs are ubiquitously present regulators in all kingdoms of life. Most bacterial and
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …
[HTML][HTML] Pervasive regulatory functions of mRNA structure revealed by high-resolution SHAPE probing
Summary mRNAs can fold into complex structures that regulate gene expression. Resolving
such structures de novo has remained challenging and has limited our understanding of the …
such structures de novo has remained challenging and has limited our understanding of the …
Non-coding RNA
JS Mattick, IV Makunin - Human molecular genetics, 2006 - academic.oup.com
The term non-coding RNA (ncRNA) is commonly employed for RNA that does not encode a
protein, but this does not mean that such RNAs do not contain information nor have function …
protein, but this does not mean that such RNAs do not contain information nor have function …
Non–coding RNA genes and the modern RNA world
SR Eddy - Nature Reviews Genetics, 2001 - nature.com
Non-coding RNA (ncRNA) genes produce functional RNA molecules rather than encoding
proteins. However, almost all means of gene identification assume that genes encode …
proteins. However, almost all means of gene identification assume that genes encode …
An overview of gene regulation in bacteria by small RNAs derived from mRNA 3′ ends
Over the past two decades, small noncoding RNAs (sRNAs) that regulate mRNAs by short
base pairing have gone from a curiosity to a major class of post-transcriptional regulators in …
base pairing have gone from a curiosity to a major class of post-transcriptional regulators in …
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
E Massé, S Gottesman - Proceedings of the National …, 2002 - National Acad Sciences
A small RNA, RyhB, was found as part of a genomewide search for novel small RNAs in
Escherichia coli. The RyhB 90-nt RNA down-regulates a set of iron-storage and iron-using …
Escherichia coli. The RyhB 90-nt RNA down-regulates a set of iron-storage and iron-using …
The microRNAs of Caenorhabditis elegans
LP Lim, NC Lau, EG Weinstein… - Genes & …, 2003 - genesdev.cshlp.org
MicroRNAs (miRNAs) are an abundant class of tiny RNAs thought to regulate the expression
of protein-coding genes in plants and animals. In the present study, we describe a …
of protein-coding genes in plants and animals. In the present study, we describe a …