[HTML][HTML] Tools for sequence-based miRNA target prediction: what to choose?

ÁL Riffo-Campos, I Riquelme… - International journal of …, 2016 - mdpi.com
MicroRNAs (miRNAs) are defined as small non-coding RNAs~ 22 nt in length. They regulate
gene expression at a post-transcriptional level through complementary base pairing with the …

[HTML][HTML] lincRNAs: genomics, evolution, and mechanisms

I Ulitsky, DP Bartel - Cell, 2013 - cell.com
Long intervening noncoding RNAs (lincRNAs) are transcribed from thousands of loci in
mammalian genomes and might play widespread roles in gene regulation and other cellular …

[HTML][HTML] Global mapping of small RNA-target interactions in bacteria

S Melamed, A Peer, R Faigenbaum-Romm, YE Gatt… - Molecular cell, 2016 - cell.com
Small RNAs (sRNAs) associated with the RNA chaperon protein Hfq are key
posttranscriptional regulators of gene expression in bacteria. Deciphering the sRNA-target …

Small RNAs in bacteria and archaea: who they are, what they do, and how they do it

EGH Wagner, P Romby - Advances in genetics, 2015 - Elsevier
Small RNAs are ubiquitously present regulators in all kingdoms of life. Most bacterial and
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …

[HTML][HTML] Pervasive regulatory functions of mRNA structure revealed by high-resolution SHAPE probing

AM Mustoe, S Busan, GM Rice, CE Hajdin… - Cell, 2018 - cell.com
Summary mRNAs can fold into complex structures that regulate gene expression. Resolving
such structures de novo has remained challenging and has limited our understanding of the …

Non-coding RNA

JS Mattick, IV Makunin - Human molecular genetics, 2006 - academic.oup.com
The term non-coding RNA (ncRNA) is commonly employed for RNA that does not encode a
protein, but this does not mean that such RNAs do not contain information nor have function …

Non–coding RNA genes and the modern RNA world

SR Eddy - Nature Reviews Genetics, 2001 - nature.com
Non-coding RNA (ncRNA) genes produce functional RNA molecules rather than encoding
proteins. However, almost all means of gene identification assume that genes encode …

An overview of gene regulation in bacteria by small RNAs derived from mRNA 3′ ends

F Ponath, J Hör, J Vogel - FEMS microbiology reviews, 2022 - academic.oup.com
Over the past two decades, small noncoding RNAs (sRNAs) that regulate mRNAs by short
base pairing have gone from a curiosity to a major class of post-transcriptional regulators in …

A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

E Massé, S Gottesman - Proceedings of the National …, 2002 - National Acad Sciences
A small RNA, RyhB, was found as part of a genomewide search for novel small RNAs in
Escherichia coli. The RyhB 90-nt RNA down-regulates a set of iron-storage and iron-using …

The microRNAs of Caenorhabditis elegans

LP Lim, NC Lau, EG Weinstein… - Genes & …, 2003 - genesdev.cshlp.org
MicroRNAs (miRNAs) are an abundant class of tiny RNAs thought to regulate the expression
of protein-coding genes in plants and animals. In the present study, we describe a …