Alignment-free sequence comparison: benefits, applications, and tools
Alignment-free sequence analyses have been applied to problems ranging from whole-
genome phylogeny to the classification of protein families, identification of horizontally …
genome phylogeny to the classification of protein families, identification of horizontally …
Advances and prospects in metabolic engineering of Zymomonas mobilis
Biorefinery of biomass-based biofuels and biochemicals by microorganisms is a competitive
alternative of traditional petroleum refineries. Zymomonas mobilis is a natural ethanologen …
alternative of traditional petroleum refineries. Zymomonas mobilis is a natural ethanologen …
AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential
M Alanjary, K Steinke, N Ziemert - Nucleic Acids Research, 2019 - academic.oup.com
Understanding the evolutionary background of a bacterial isolate has applications for a wide
range of research. However generating an accurate species phylogeny remains …
range of research. However generating an accurate species phylogeny remains …
Serratia spp. Are Responsible for Nitrogen Fixation Fueled by As(III) Oxidation, a Novel Biogeochemical Process Identified in Mine Tailings
Biological nitrogen fixation (BNF) has important environmental implications in tailings by
providing bioavailable nitrogen to these habitats and sustaining ecosystem functions …
providing bioavailable nitrogen to these habitats and sustaining ecosystem functions …
A comparative genomics study of 23 Aspergillus species from section Flavi
I Kjærbølling, T Vesth, JC Frisvad, JL Nybo… - Nature …, 2020 - nature.com
Section Flavi encompasses both harmful and beneficial Aspergillus species, such as
Aspergillus oryzae, used in food fermentation and enzyme production, and Aspergillus …
Aspergillus oryzae, used in food fermentation and enzyme production, and Aspergillus …
Conserved fungal effector suppresses PAMP-triggered immunity by targeting plant immune kinases
Plant pathogens have optimized their own effector sets to adapt to their hosts. However,
certain effectors, regarded as core effectors, are conserved among various pathogens, and …
certain effectors, regarded as core effectors, are conserved among various pathogens, and …
Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates
The throwaway culture related to the single‐use materials such as polyethylene
terephthalate (PET) has created a major environmental concern. Recycling of PET waste …
terephthalate (PET) has created a major environmental concern. Recycling of PET waste …
bcgTree: automatized phylogenetic tree building from bacterial core genomes
MJ Ankenbrand, A Keller - Genome, 2016 - cdnsciencepub.com
The need for multi-gene analyses in scientific fields such as phylogenetics and DNA
barcoding has increased in recent years. In particular, these approaches are increasingly …
barcoding has increased in recent years. In particular, these approaches are increasingly …
The sulfonamide-resistance dihydropteroate synthase gene is crucial for efficient biodegradation of sulfamethoxazole by Paenarthrobacter species
T Wu, SZ Guo, HZ Zhu, L Yan, ZP Liu, DF Li… - Applied Microbiology …, 2023 - Springer
Sulfonamide antibiotics (SAs) are serious pollutants to ecosystems and environments.
Previous studies showed that microbial degradation of SAs such as sulfamethoxazole (SMX) …
Previous studies showed that microbial degradation of SAs such as sulfamethoxazole (SMX) …
A comparative genomic analysis of lichen-forming fungi reveals new insights into fungal lifestyles
Lichen-forming fungi are mutualistic symbionts of green algae or cyanobacteria. We report
the comparative analysis of six genomes of lichen-forming fungi in classes Eurotiomycetes …
the comparative analysis of six genomes of lichen-forming fungi in classes Eurotiomycetes …