Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics

T Nojima, NJ Proudfoot - Nature reviews Molecular cell biology, 2022 - nature.com
Mammalian genomes express two principal gene categories through RNA polymerase II-
mediated transcription: protein-coding transcription units and non-coding RNA transcription …

Knowing when to stop: Transcription termination on protein-coding genes by eukaryotic RNAPII

JB Rodríguez-Molina, S West, LA Passmore - Molecular cell, 2023 - cell.com
Gene expression is controlled in a dynamic and regulated manner to allow for the consistent
and steady expression of some proteins as well as the rapidly changing production of other …

RNase L activation in the cytoplasm induces aberrant processing of mRNAs in the nucleus

JM Burke, N Ripin, MB Ferretti, LA St Clair… - PLoS …, 2022 - journals.plos.org
The antiviral endoribonuclease, RNase L, is activated by the mammalian innate immune
response to destroy host and viral RNA to ultimately reduce viral gene expression. Herein …

Transcription and splicing: A two‐way street

M Tellier, I Maudlin, S Murphy - Wiley Interdisciplinary Reviews …, 2020 - Wiley Online Library
RNA synthesis by RNA polymerase II and RNA processing are closely coupled during the
transcription cycle of protein‐coding genes. This coupling affords opportunities for quality …

Hyperosmotic stress alters the RNA polymerase II interactome and induces readthrough transcription despite widespread transcriptional repression

NA Rosa-Mercado, JT Zimmer, M Apostolidi, J Rinehart… - Molecular cell, 2021 - cell.com
Stress-induced readthrough transcription results in the synthesis of downstream-of-gene
(DoG)-containing transcripts. The mechanisms underlying DoG formation during cellular …

The influenza A virus endoribonuclease PA-X usurps host mRNA processing machinery to limit host gene expression

L Gaucherand, BK Porter, RE Levene, EL Price… - Cell reports, 2019 - cell.com
Many viruses shut off host gene expression to inhibit antiviral responses. Viral proteins and
host proteins required for viral replication are typically spared in this process, but the …

The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome

T Krischuns, B Arragain, C Isel, S Paisant… - Nature …, 2024 - nature.com
The current model is that the influenza virus polymerase (FluPol) binds either to host RNA
polymerase II (RNAP II) or to the acidic nuclear phosphoprotein 32 (ANP32), which drives its …

Innate immune response to influenza virus at single-cell resolution in human epithelial cells revealed paracrine induction of interferon lambda 1

I Ramos, G Smith, F Ruf-Zamojski… - Journal of …, 2019 - Am Soc Microbiol
Early interactions of influenza A virus (IAV) with respiratory epithelium might determine the
outcome of infection. The study of global cellular innate immune responses often masks …

[HTML][HTML] Epstein-Barr virus induces host shutoff extensively via BGLF5-independent mechanisms

A Casco, M Ohashi, E Johannsen - Cell reports, 2024 - cell.com
Epstein-Barr virus (EBV) is a ubiquitous oncogenic virus associated with multiple cancers
and autoimmune diseases. Unlike most herpesviruses, EBV reactivation from latency occurs …

Cut site preference allows influenza A virus PA-X to discriminate between host and viral mRNAs

L Gaucherand, A Iyer, I Gilabert, CH Rycroft… - Nature …, 2023 - nature.com
Many viruses block host gene expression to take over the infected cell. This process, termed
host shutoff, is thought to promote viral replication by preventing antiviral responses and …