Optimized Illumina PCR-free library preparation for bacterial whole genome sequencing and analysis of factors influencing de novo assembly

C Huptas, S Scherer, M Wenning - BMC research notes, 2016 - Springer
Background Next-generation sequencing (NGS) technology has paved the way for rapid
and cost-efficient de novo sequencing of bacterial genomes. In particular, the introduction of …

Stem rust resistance in wheat is suppressed by a subunit of the mediator complex

CW Hiebert, MJ Moscou, T Hewitt… - Nature …, 2020 - nature.com
Stem rust is an important disease of wheat that can be controlled using resistance genes.
The gene SuSr-D1 identified in cultivar 'Canthatch'suppresses stem rust resistance. SuSr-D1 …

Novel putative bluetongue virus serotype 29 isolated from inapparently infected goat in Xinjiang of China

H Yang, W Gu, Z Li, L Zhang, D Liao… - Transboundary and …, 2021 - Wiley Online Library
Bluetongue virus (BTV) is the 'type'species of the genus Orbivirus causing bluetongue (BT)
in sheep, bovine and other ruminants. Twenty‐four serotypes and several atypical serotypes …

Bacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere

Ö Eyice, N Myronova, A Pol, O Carrión… - The ISME …, 2018 - academic.oup.com
Oxidation of methanethiol (MT) is a significant step in the sulfur cycle. MT is an intermediate
of metabolism of globally significant organosulfur compounds including …

Whole-Genome Sequences of Xanthomonas euvesicatoria Strains Clarify Taxonomy and Reveal a Stepwise Erosion of Type 3 Effectors

JD Barak, T Vancheva, P Lefeuvre, JB Jones… - Frontiers in plant …, 2016 - frontiersin.org
Multiple species of Xanthomonas cause bacterial spot of tomato (BST) and pepper. We
sequenced five Xanthomonas euvesicatoria strains isolated from three continents (Africa …

Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas

JM Jacobs, C Pesce, P Lefeuvre… - Frontiers in plant …, 2015 - frontiersin.org
Pathogenic bacteria in the genus Xanthomonas cause diseases on over 350 plant species,
including cannabis (Cannabis sativa L.). Because of regulatory limitations, the biology of the …

Prophages and adaptation of Staphylococcus aureus ST398 to the human clinic

SM Diene, AR Corvaglia, P François… - BMC genomics, 2017 - Springer
Background It has been suggested that prophages in the ST398 S. aureus clone are
responsible for expanding ST398's spectrum of action and increasing its ability to cause …

Comprehensive probiogenomics analysis of the commensal Escherichia coli CEC15 as a potential probiotic strain

TF da Silva, RA Glória, TJ de Sousa, MF Americo… - BMC microbiology, 2023 - Springer
Background Probiotics have gained attention for their potential maintaining gut and immune
homeostasis. They have been found to confer protection against pathogen colonization …

Comparative Genomics of Community-Associated Methicillin-Resistant Staphylococcus aureus Shows the Emergence of Clone ST8-USA300 in Geneva, Switzerland

E Von Dach, SM Diene, C Fankhauser… - The Journal of …, 2016 - academic.oup.com
Background. Previous investigations of community-associated methicillin-resistant
Staphylococcus aureus (CA-MRSA) isolates have revealed a wide diversity of genetic …

Impact of Exposure of Methicillin-Resistant Staphylococcus aureus to Polyhexanide In Vitro and In Vivo

A Renzoni, E Von Dach, C Landelle… - Antimicrobial agents …, 2017 - Am Soc Microbiol
Methicillin-resistant Staphylococcus aureus (MRSA) resistant to decolonization agents such
as mupirocin and chlorhexidine increases the need for development of alternative …