MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

M Uliano-Silva, JGRN Ferreira, K Krasheninnikova… - BMC …, 2023 - Springer
Abstract Background PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb)
and highly accurate (> Q20). Because of these properties, they have revolutionised genome …

Insect Mitochondrial Genomics: A Decade of Progress

SL Cameron - Annual Review of Entomology, 2024 - annualreviews.org
The past decade has seen the availability of insect genomic data explode, with
mitochondrial (mt) genome data seeing the greatest growth. The widespread adoption of …

Phylogenomics illuminates the phylogeny of flower weevils (Curculioninae) and reveals ten independent origins of brood-site pollination mutualism in true weevils

J Haran, X Li, R Allio, S Shin… - … of the Royal …, 2023 - royalsocietypublishing.org
Weevils are an unusually species-rich group of phytophagous insects for which there is
increasing evidence of frequent involvement in brood-site pollination. This study examines …

Application of phylogenomic tools to unravel anthozoan evolution

ZBR Quek, D Huang - Coral Reefs, 2022 - Springer
Comprising approximately 7500 living species of various corals and sea anemones,
Anthozoa ranks among the most ecologically and economically valuable marine taxa …

Island songbirds as windows into evolution in small populations

T Leroy, M Rousselle, MK Tilak, AE Caizergues… - Current Biology, 2021 - cell.com
Due to their limited ranges and inherent isolation, island species have long been recognized
as crucial systems for tackling a range of evolutionary questions, including in the early study …

Mito-nuclear discordance within Anthozoa, with notes on unique properties of their mitochondrial genomes

AM Quattrini, KE Snyder, R Purow-Ruderman… - Scientific Reports, 2023 - nature.com
Whole mitochondrial genomes are often used in phylogenetic reconstruction. However,
discordant patterns in species relationships between mitochondrial and nuclear phylogenies …

A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis

BF Manley, JS Lotharukpong… - G3: Genes …, 2023 - academic.oup.com
The root systems of most plant species are aided by the soil-foraging capacities of symbiotic
arbuscular mycorrhizal (AM) fungi of the Glomeromycotina subphylum. Despite recent …

Prevalence and polymorphism of a mussel transmissible cancer in Europe

M Hammel, A Simon, C Arbiol, A Villalba… - Molecular …, 2022 - Wiley Online Library
Transmissible cancers are parasitic malignant cell lineages that have acquired the ability to
infect new hosts from the same species, or sometimes related species. First described in …

Genomics reveals introgression and purging of deleterious mutations in the Arabian leopard (Panthera pardus nimr)

G Mochales-Riaño, C Fontsere, M de Manuel… - Iscience, 2023 - cell.com
In endangered species, low-genetic variation and inbreeding result from recent population
declines. Genetic screenings in endangered populations help to assess their vulnerability to …

Complex evolutionary history with extensive ancestral gene flow in an African primate radiation

A Jensen, F Swift, D de Vries, RMD Beck… - Molecular biology …, 2023 - academic.oup.com
Understanding the drivers of speciation is fundamental in evolutionary biology, and recent
studies highlight hybridization as an important evolutionary force. Using whole-genome …