MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
M Uliano-Silva, JGRN Ferreira, K Krasheninnikova… - BMC …, 2023 - Springer
Abstract Background PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb)
and highly accurate (> Q20). Because of these properties, they have revolutionised genome …
and highly accurate (> Q20). Because of these properties, they have revolutionised genome …
Insect Mitochondrial Genomics: A Decade of Progress
SL Cameron - Annual Review of Entomology, 2024 - annualreviews.org
The past decade has seen the availability of insect genomic data explode, with
mitochondrial (mt) genome data seeing the greatest growth. The widespread adoption of …
mitochondrial (mt) genome data seeing the greatest growth. The widespread adoption of …
Phylogenomics illuminates the phylogeny of flower weevils (Curculioninae) and reveals ten independent origins of brood-site pollination mutualism in true weevils
Weevils are an unusually species-rich group of phytophagous insects for which there is
increasing evidence of frequent involvement in brood-site pollination. This study examines …
increasing evidence of frequent involvement in brood-site pollination. This study examines …
Island songbirds as windows into evolution in small populations
Due to their limited ranges and inherent isolation, island species have long been recognized
as crucial systems for tackling a range of evolutionary questions, including in the early study …
as crucial systems for tackling a range of evolutionary questions, including in the early study …
Mito-nuclear discordance within Anthozoa, with notes on unique properties of their mitochondrial genomes
AM Quattrini, KE Snyder, R Purow-Ruderman… - Scientific Reports, 2023 - nature.com
Whole mitochondrial genomes are often used in phylogenetic reconstruction. However,
discordant patterns in species relationships between mitochondrial and nuclear phylogenies …
discordant patterns in species relationships between mitochondrial and nuclear phylogenies …
A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis
BF Manley, JS Lotharukpong… - G3: Genes …, 2023 - academic.oup.com
The root systems of most plant species are aided by the soil-foraging capacities of symbiotic
arbuscular mycorrhizal (AM) fungi of the Glomeromycotina subphylum. Despite recent …
arbuscular mycorrhizal (AM) fungi of the Glomeromycotina subphylum. Despite recent …
Prevalence and polymorphism of a mussel transmissible cancer in Europe
Transmissible cancers are parasitic malignant cell lineages that have acquired the ability to
infect new hosts from the same species, or sometimes related species. First described in …
infect new hosts from the same species, or sometimes related species. First described in …
Genomics reveals introgression and purging of deleterious mutations in the Arabian leopard (Panthera pardus nimr)
In endangered species, low-genetic variation and inbreeding result from recent population
declines. Genetic screenings in endangered populations help to assess their vulnerability to …
declines. Genetic screenings in endangered populations help to assess their vulnerability to …
Complex evolutionary history with extensive ancestral gene flow in an African primate radiation
Understanding the drivers of speciation is fundamental in evolutionary biology, and recent
studies highlight hybridization as an important evolutionary force. Using whole-genome …
studies highlight hybridization as an important evolutionary force. Using whole-genome …