Topological change of soil microbiota networks for forest resilience under global warming
Forest management by thinning can mitigate the detrimental impact of increasing drought
caused by global warming. Growing evidence shows that the soil microbiota can coordinate …
caused by global warming. Growing evidence shows that the soil microbiota can coordinate …
Hypernetwork modeling and topology of high-order interactions for complex systems
L Feng, H Gong, S Zhang, X Liu, Y Wang, J Che… - Proceedings of the …, 2024 - pnas.org
Interactions among the underlying agents of a complex system are not only limited to dyads
but can also occur in larger groups. Currently, no generic model has been developed to …
but can also occur in larger groups. Currently, no generic model has been developed to …
Understanding the SARS-CoV-2–Human Liver Interactome Using a Comprehensive Analysis of the Individual Virus–Host Interactions
G Colonna - Livers, 2024 - mdpi.com
Many metabolic processes at the molecular level support both viral attack strategies and
human defenses during COVID-19. This knowledge is of vital importance in the design of …
human defenses during COVID-19. This knowledge is of vital importance in the design of …
Homotopy Groups and Puppe Sequence of Digraphs
J Li, J Wu, ST Yau, M Zhang - arXiv preprint arXiv:2402.01110, 2024 - arxiv.org
We introduce homotopy groups of digraphs that admit an intuitive description of grid
structures, which is a variation of the GLMY homotopy groups introduced by Grigor'yan, Lin …
structures, which is a variation of the GLMY homotopy groups introduced by Grigor'yan, Lin …
New Aspects of Analyzing Amyloid Fibrils
X Lin, Y Zi, J Wu - arXiv preprint arXiv:2405.14370, 2024 - arxiv.org
This is a summary of mathematical tools we used in research of analyzing the structure of
proteins with amyloid form\cite {xi2024Top}. We defined several geometry indicators on the …
proteins with amyloid form\cite {xi2024Top}. We defined several geometry indicators on the …
A Vectorization Method Induced By Maximal Margin Classification For Persistent Diagrams
A Wu, Y Pan, F Zhou, J Yan, C Liu - arXiv preprint arXiv:2407.21298, 2024 - arxiv.org
Persistent homology is an effective method for extracting topological information,
represented as persistent diagrams, of spatial structure data. Hence it is well-suited for the …
represented as persistent diagrams, of spatial structure data. Hence it is well-suited for the …
[PDF][PDF] IdopNetwork as a genomic predictor of drug response
J Che, H Gong, S Zhang, X Liu, Y Wang, C Gragnoli… - bimsa.net
Given the multifactorial feature of drug response, portraying its systematic control
mechanism is, despite being challenging, crucial for pharmacogenomic research. We …
mechanism is, despite being challenging, crucial for pharmacogenomic research. We …
[引用][C] Persistent Path Homology for Quantitative Analysis of Carboranes
B Wang, M Zhang, F Pan - Journal of Computational Biophysics and …, 2024 - World Scientific
Persistent path homology represents an advanced mathematical approach explicitly tailored
for directed systems. With its remarkable ability to characterize unbalanced or asymmetrical …
for directed systems. With its remarkable ability to characterize unbalanced or asymmetrical …
[引用][C] Causal inference from high-dimensional static data in soil microbiota networks: Comment on" Topological change of soil microbiota networks for forest …
A Berg - Physics of life reviews, 2024 - pubmed.ncbi.nlm.nih.gov